Factsheet for Bra013940.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89376	Canola	cytosol	99.53	99.53
Bra019133.1-P	Field mustard	cytosol	52.47	56.03
AT4G26000.1	Thale cress	cytosol	64.0	54.95
KRH02776	Soybean	nucleus	44.24	43.12
KRH19104	Soybean	nucleus	44.0	42.89
VIT_11s0052g00030.t01	Wine grape	plastid	45.88	41.85
KRH12329	Soybean	cytosol, nucleus	42.59	40.95
KRH37335	Soybean	cytosol, nucleus	42.12	40.41
Solyc07g008490.2.1	Tomato	nucleus	40.94	36.1
Os10t0564000-01	Rice	cytosol	37.88	35.15
TraesCS1D01G218700.1	Wheat	cytosol	37.18	35.11
TraesCS1B01G229900.1	Wheat	cytosol	36.94	34.97
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	36.24	34.92
TraesCS1A01G216900.1	Wheat	cytosol	36.94	34.89
Zm00001d029973_P001	Maize	plasma membrane	36.71	34.82
EER94472	Sorghum	cytosol	36.47	34.29
HORVU1Hr1G055480.1	Barley	plastid	37.41	31.67
PGSC0003DMT400046406	Potato	cytosol	41.41	29.83
Bra001111.1-P	Field mustard	cytosol	27.29	29.74
GSMUA_Achr8P14980_001	Banana	cytosol	38.82	29.46
Os02t0125500-00	Rice	cytosol	29.65	28.7
GSMUA_Achr11P...	Banana	mitochondrion	38.59	28.62
Zm00001d015093_P001	Maize	cytosol	30.82	27.99
TraesCS6B01G113100.1	Wheat	cytosol	29.18	26.55
KXG29352	Sorghum	cytosol	32.24	26.55
TraesCS6A01G084000.1	Wheat	cytosol	29.88	26.51
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	29.41	25.25
Bra008709.1-P	Field mustard	nucleus	19.06	15.67
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	15.06	15.65
Bra026852.1-P	Field mustard	nucleus	16.24	14.23
Bra006294.1-P	Field mustard	nucleus	20.0	14.17
Bra013302.1-P	Field mustard	nucleus	16.94	12.29
Bra025032.1-P	Field mustard	nucleus	18.59	12.23
Bra024789.1-P	Field mustard	cytosol	10.59	11.97
Bra014290.1-P	Field mustard	plastid	16.0	11.7
Bra022624.1-P	Field mustard	nucleus	16.24	10.44
Bra030226.1-P	Field mustard	plastid	15.06	10.32
Bra003085.1-P	Field mustard	nucleus	15.29	10.17
Bra038508.1-P	Field mustard	cytosol, plastid	15.06	10.02
Bra024292.1-P	Field mustard	nucleus	17.88	8.87

Protein Annotations

EnsemblPlants:Bra013940.1	EnsemblPlants:Bra013940.1-P	EnsemblPlantsGene:Bra013940	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF132	PFAM:PF00013	PFscan:PS50084	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002546BE5	UniProt:M4DBT0	MapMan:35.1	:

Description

AT4G26000 (E=3e-090) PEP | PEP (PEPPER); RNA binding / nucleic acid binding

Coordinates

chrA01:+:8567460..8569593

Molecular Weight (calculated)

46217.8 Da

IEP (calculated)

5.193

GRAVY (calculated)

-0.217

Length

425 amino acids

Sequence
(BLAST)

001: MSAVADSVKN GPLKLPENEN LTPSGVRATA FPNENSGAAE RWPGFPGDCV FRLIIPAHKV GAITGRQGEF IRKLWQETRA RIQVLDGPVT THNRLVIISG
101: KEKPEANMSP AMEAVVRVFR RIARLPDNDD DDQDAVSAYS SVRLLVPGTQ ALSLIGKQGS IIKSIVQNSG ASVRILSQDA TPWYAAEDER IVAFHGEALK
201: IVKALEAVVG HLRKYLVDHF VIPFFEEEYL ARVFQEDGAL ADKNPSLPAE PSNVTDSDSW LLARREALVL EGKNRVESRV QPSGVLFTQE DPIFSAIEVC
301: QTVRAPISYS DDIIGSGGAN INYIRWRSGA ILIVEESLNP GEMILVIKGT FSQVEIAYQL IQELVSTQKD PVSVSGGNAR IDTGNVPVNP PQLSNRQETL
401: SSSYMGTETG PNASSQVTGP SPSRH

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.