Factsheet for Zm00001d015093_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29352	Sorghum	cytosol	77.56	70.35
TraesCS6A01G084000.1	Wheat	cytosol	55.77	54.49
Os02t0125500-00	Rice	cytosol	50.43	53.76
TraesCS6B01G113100.1	Wheat	cytosol	53.63	53.75
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	54.27	51.31
Solyc05g041740.1.1	Tomato	plastid	20.09	44.76
KRH02776	Soybean	nucleus	35.68	38.3
Zm00001d029973_P001	Maize	plasma membrane	36.11	37.72
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	35.47	37.64
KRH19104	Soybean	nucleus	35.04	37.61
KRH12329	Soybean	cytosol, nucleus	35.26	37.33
KRH37335	Soybean	cytosol, nucleus	34.83	36.79
VIT_11s0052g00030.t01	Wine grape	plastid	35.04	35.19
Solyc08g074330.1.1	Tomato	plastid	16.88	34.8
Solyc05g043210.1.1	Tomato	plastid	18.16	33.6
Solyc07g008490.2.1	Tomato	nucleus	33.55	32.57
PGSC0003DMT400076105	Potato	plastid	31.62	32.03
AT4G26000.1	Thale cress	cytosol	32.91	31.11
CDX89376	Canola	cytosol	28.21	31.06
Bra013940.1-P	Field mustard	cytosol	27.99	30.82
CDY42768	Canola	cytosol	32.27	30.63
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	31.41	30.62
CDX92741	Canola	cytosol	32.05	30.43
GSMUA_Achr8P14980_001	Banana	cytosol	36.11	30.18
Bra019133.1-P	Field mustard	cytosol	25.21	29.65
GSMUA_Achr11P...	Banana	mitochondrion	36.11	29.49
CDY65294	Canola	cytosol	26.92	28.7
PGSC0003DMT400046406	Potato	cytosol	33.33	26.44
Zm00001d030968_P006	Maize	extracellular	28.21	25.98
Solyc05g042180.1.1	Tomato	plastid	14.74	25.27
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	16.24	23.75
Zm00001d003290_P002	Maize	mitochondrion	10.9	22.27
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	29.91	21.31
Zm00001d010815_P001	Maize	mitochondrion	13.25	17.71
Zm00001d014180_P004	Maize	cytosol	22.86	16.54
Zm00001d029328_P002	Maize	nucleus	17.31	14.97
Zm00001d024270_P001	Maize	nucleus	16.45	12.18
Zm00001d049390_P001	Maize	nucleus	16.03	11.89
Zm00001d009014_P004	Maize	nucleus	16.45	10.92
Zm00001d046033_P001	Maize	nucleus	14.32	10.04
Zm00001d013963_P002	Maize	nucleus	16.45	9.44
Zm00001d019538_P002	Maize	plastid	13.46	9.33
Zm00001d006055_P002	Maize	plastid	11.54	8.65
Zm00001d037055_P003	Maize	nucleus	13.46	8.51
Zm00001d032597_P006	Maize	golgi, plasma membrane	16.24	7.71

Protein Annotations

EntrezGene:100192689	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	UniProt:A0A1D6GZ98	ProteinID:AQK68067.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF169
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002217058	EnsemblPlantsGene:Zm00001d015093	EnsemblPlants:Zm00001d015093_P001	EnsemblPlants:Zm00001d015093_T001
SEG:seg	:	:	:	:	:

Description

RNA-binding KH domain-containing protein PEPPER

Coordinates

chr5:+:75198859..75203582

Molecular Weight (calculated)

51385.4 Da

IEP (calculated)

4.524

GRAVY (calculated)

-0.488

Length

468 amino acids

Sequence
(BLAST)

001: MEPPAWSPPR EEEEEEETEI DFDEEEDPEE VEPWFTSSGS EPELEPEPEP KHPAPTPSPA PAWAEPEQQP APVTAVEATK KGEGEDARPR WPGWPGASVF
101: RLVVPADKVG GIIGRRGDTI KRLCDETRAR VRVLDAPHGD GAFSRIVLVS AREEVEAELS PAMNAAIKIF KHINEIEDIN SDGTLMAPAP EISSVRLLVP
201: FAQALHVIGK QGVTIKSIQE STGSTVRIMD EDELLSHETM GERIVEINGA SLEVLNALKL VLGLLRKFLV DHGVLHLFER KNPEVAQPQQ SRGNPKGSRF
301: LYGHDPSFHA PYSRDLSQPA DSLITKITRT MQIPLADVGE IIGVRGENVE LIRSVSGAVV VLEKIGNGQE VRVMIEGTPS QVQTAHQLVQ EALSGDRGLP
401: SGSSYYSAEG GDGDPSLVKP PHAGPRFLHP ISAIEASWDY LPWQYQEQTP RDDHRGYPTL SDYRGYLP

Best Arabidopsis Sequence Match ( AT3G04610.1 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVPD PTLEPQQYEV PDQTLEPQQY EVDDQLEYHQ YQLQDQANED
101: VQDHSQDDLQ YQPQNQEQFQ LQDEAHDQAQ YQAQGDVQDH NGDEVQDKVE DEEGIPEHLE SLQKSEPEED ATVGGEEKRW PGWPGETVFR MLVPAQKVGS
201: IIGRKGDVIK KIVEETRARI KILDGPPGTT ERAVMVSGKE EPESSLPPSM DGLLRVHMRI VDGLDGEASQ APPPSKVSTR LLVPASQAGS LIGKQGGTVK
301: AIQEASACIV RVLGSEDLPV FALQDDRVVE VVGEPTSVHR ALELIASHLR KFLVDRSIIP FFENQMQKPT RQMDHMPPPH QSWGPPQGHA PSVGGGGYGH
401: NPPPYMQPPP RHDSYYPPPE MRQPPMEKQP HQGISAYGRE PPMNVHVSSA PPMVAQQVTQ QMQIPLSYAD AVIGTSGSNI SYTRRLSGAT VTIQETRGVP
501: GEMTVEVSGT GSQVQTAVQL IQNFMAEAGA PAPAQPQTVA PEQQGYNPYA THGSVYAAAP TNPPGGYATD YSSGYGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.