Factsheet for Zm00001d029328_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39277	Sorghum	nucleus	94.45	94.28
Os03t0376800-02	Rice	nucleus	82.62	82.47
TraesCS4A01G150800.1	Wheat	nucleus	78.74	79.04
TraesCS4D01G160700.2	Wheat	nucleus	76.89	73.89
HORVU4Hr1G049680.1	Barley	nucleus	78.93	73.37
TraesCS4B01G166500.2	Wheat	nucleus	76.34	73.36
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	68.21	69.62
GSMUA_Achr6P10750_001	Banana	nucleus	64.14	65.23
VIT_01s0026g02650.t01	Wine grape	nucleus	65.06	61.54
Solyc05g007810.2.1	Tomato	nucleus	56.38	57.33
PGSC0003DMT400047374	Potato	nucleus	56.19	57.04
AT2G03110.1	Thale cress	cytosol	15.53	54.9
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	41.22	54.52
CDY33769	Canola	nucleus	47.87	53.4
Bra026852.1-P	Field mustard	nucleus	47.87	53.4
CDX81615	Canola	cytosol	45.1	53.16
AT1G14170.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	46.95	53.03
CDY39336	Canola	mitochondrion	45.84	52.43
CDY49107	Canola	nucleus	46.03	52.42
CDY03018	Canola	nucleus	43.99	50.85
CDY45180	Canola	cytosol	37.34	47.75
Bra024789.1-P	Field mustard	cytosol	32.72	47.07
CDY51849	Canola	cytosol	8.5	43.4
Zm00001d029973_P001	Maize	plasma membrane	20.52	24.78
Zm00001d024270_P001	Maize	nucleus	28.47	24.37
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	19.78	24.26
Zm00001d049390_P001	Maize	nucleus	27.54	23.61
Zm00001d003290_P002	Maize	mitochondrion	9.98	23.58
Zm00001d013963_P002	Maize	nucleus	34.94	23.16
Zm00001d006055_P002	Maize	plastid	24.77	21.47
Zm00001d009014_P004	Maize	nucleus	26.99	20.71
Zm00001d030968_P006	Maize	extracellular	18.67	19.88
Zm00001d032597_P006	Maize	golgi, plasma membrane	35.49	19.47
Zm00001d019538_P002	Maize	plastid	23.48	18.81
Zm00001d046033_P001	Maize	nucleus	22.74	18.44
Zm00001d015093_P001	Maize	cytosol	14.97	17.31
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	20.33	16.74
Zm00001d010815_P001	Maize	mitochondrion	10.72	16.57
Zm00001d037055_P003	Maize	nucleus	22.55	16.49
Zm00001d014180_P004	Maize	cytosol	19.41	16.23

Protein Annotations

EntrezGene:100502234	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EMBL:BT087491	UniProt:C4J9J4
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	ProteinID:ONL98448.1	ProteinID:ONL98449.1	ProteinID:ONL98450.1	ProteinID:ONL98452.1
ProteinID:ONL98454.1	ProteinID:ONL98455.1	ProteinID:ONL98456.1	ProteinID:ONL98457.1	ProteinID:ONL98458.1	ProteinID:ONL98459.1
ProteinID:ONL98460.1	ProteinID:ONL98461.1	ProteinID:ONL98462.1	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288
PANTHER:PTHR10288:SF151	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0001A4C837	EnsemblPlantsGene:Zm00001d029328	EnsemblPlants:Zm00001d029328_P002
EnsemblPlants:Zm00001d029328_T002	SEG:seg	:	:	:	:

Description

RNA-binding KH domain-containing protein

Coordinates

chr1:-:66120056..66126498

Molecular Weight (calculated)

57816.8 Da

IEP (calculated)

7.339

GRAVY (calculated)

-0.432

Length

541 amino acids

Sequence
(BLAST)

001: MAGHRNSHGK RQSDFTENGG SKRRNPGDDT YAPGPDDTVY RYLCASRKIG SIIGRGGEIA KQLRTETQAK IRIGESVPGC DERVVTIFST SRKTNTIDGA
101: EDEVCPAQDA LFRVHERLAS DEGLGNEDSE EISPQVTVRL LVPSDQIGCI IGKGGQIIQG IRSETGAQIR VLSNDHIPAC AISGDELLQI SGDTVVVRKA
201: LHQVSSRLHN NPSKSQHLLA SSLTQPYPGS THLGGSSTAP VVGITPVIPP YGGYKGDVAG DWPSLYQPRR DESSAKEFSL RLLCAAANVG GVIGKGGGII
301: KQIRQESGAL IKVASSNSDP DDDCIITVSA KEFFEDPVSP TIDAAVRLQP RCSEKSDLES AEQSYTTRLL VSTSRIGCLI GKGGSIITEI RRTSRANVRI
401: LSKENVPKVA AEDDEMVQIT GGLDVARNAL VQIATRLKAN FFEREGSLSA FPPVIPYHPL PAGVSDEPKY LGRDTKPVGH YLYSSGFRTS DDTIPSDSYA
501: SYGGSQAPGR GYGAYSGYSA RSSNSGLSGH SSLHYGKRHG Y

Best Arabidopsis Sequence Match ( AT5G15270.1 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.