Factsheet for Zm00001d032597_P006

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

plastid 2
golgi 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013963_P002	Maize	nucleus	72.31	87.38
KXG38256	Sorghum	nucleus	70.49	86.88
Os10t0495000-01	Rice	nucleus	55.48	71.78
TraesCS1D01G161200.3	Wheat	nucleus	56.8	67.31
HORVU1Hr1G043680.7	Barley	nucleus	55.27	66.87
TraesCS1A01G164200.3	Wheat	nucleus	57.0	66.83
TraesCS1B01G181000.3	Wheat	nucleus	56.8	66.59
GSMUA_Achr3P21030_001	Banana	nucleus	33.16	49.1
VIT_14s0006g02960.t01	Wine grape	nucleus, plastid	26.98	39.35
Zm00001d029328_P002	Maize	nucleus	19.47	35.49
Solyc03g034200.2.1	Tomato	nucleus	23.63	32.96
Zm00001d024270_P001	Maize	nucleus	17.85	27.85
Zm00001d049390_P001	Maize	nucleus	17.55	27.42
Zm00001d006055_P002	Maize	plastid	16.33	25.8
Zm00001d009014_P004	Maize	nucleus	17.34	24.26
Zm00001d046033_P001	Maize	nucleus	15.52	22.94
Zm00001d037055_P003	Maize	nucleus	15.52	20.68
Zm00001d029973_P001	Maize	plasma membrane	9.33	20.54
Zm00001d003290_P002	Maize	mitochondrion	4.77	20.52
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	9.13	20.41
Zm00001d019538_P002	Maize	plastid	12.78	18.67
Zm00001d030968_P006	Maize	extracellular	9.33	18.11
Zm00001d015093_P001	Maize	cytosol	7.71	16.24
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	10.24	15.37
Zm00001d010815_P001	Maize	mitochondrion	5.17	14.57
Zm00001d014180_P004	Maize	cytosol	9.23	14.06

Protein Annotations

EntrezGene:100193713	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	UniProt:A0A1D6KS04	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	ProteinID:ONM05486.1	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF130
SMART:SM00322	SUPFAM:SSF54791	SignalP:SignalP-noTM	UniParc:UPI000843028F	EnsemblPlantsGene:Zm00001d032597	EnsemblPlants:Zm00001d032597_P006
EnsemblPlants:Zm00001d032597_T006	SEG:seg	:	:	:	:

Description

Nucleic acid binding protein

Coordinates

chr1:-:231553049..231559488

Molecular Weight (calculated)

108106.0 Da

IEP (calculated)

7.729

GRAVY (calculated)

-0.445

Length

986 amino acids

Sequence
(BLAST)

001: MLLALFLVLG LYVGCRDPIW GSVNGSRFPQ RSGGPHASSP NRTGVATDSD TPFNPPAFLL SCSPLVPALS RGDDLRDRRQ RQAPRSSSVL SSETSTQQCA
101: HLGMFIVLLI GHDVGDETWM LSSNVSLSAK CKANCSRILL LCYVHALTEV PLTTVFMQYA YGATRLVLMD YDKSRRSNSK KRTHSNSDDG KRKRLNTRHD
201: DTSMFSEPIE TIYRILCPVK KIGSVLGRGG DIVKALREET KAKIRVADSI PGADERVIII FNYQNEPEPT DEAAEEKNSD GLGNFKSHCF AQDALLKIHD
301: KIVSDEIHDE VANDEKSESA DDVTARILVQ GNQVGCLLGK GGSIIQQLRS NTGAGIRVLP SENLPQCALK SDELVQDMSV IYHIFMIFQI SGAPSLVRKA
401: LYEISTRLHQ HPRKENRPLE EIIDASTQRK RESPTLQHEY SMLPHLHSDH TPPIPLLDPY RSGPQYPVTE TEEFSIRILC ASELIGSVIG KSGANVRRVE
501: QQTGARIKVQ EIDKDASGER LIIISSNEIP AEPISPAIEA LILLHDKVSA PSEKHHSSTR LVVPSSKVGC IIGEGGKVIT DMRRRTGAEI RVYSKADKPK
601: YLSFDDELVQ VAGPPTIARG ALTEIASRLR TRTLRDTSTA NNPPPFAPFD DPPVDMPSRK LSLYGGPATD PPYGRPANDP LYGRPAIDPP FGRPTNDRPY
701: GRTAVAPPFG RPANDPPYGR PTNDPPYGRP SGSIPYGRPN GSAPREPSDA YPVDYFSKRE YPSGSPMFTS NAPSAAYERY AAPTRFPTRE FPSAFSPGVD
801: HMPHHSYRDH VPTDSYSSRG TQQLGITRGG NSDAYDYTEL GCTLLLLALT NFSLFCGLSE NLKFCTYLNF IIAQAAGQIH GREDYREPTS ATGRFLSTIE
901: LRIPNSSLGS IVGAGGVNLA EIRQVSGARL RLHEAHAGSS ESVVEIQGTL DQAKAAQSLL QGFISANSRQ QQQPYSSRMP LYPSWG

Best Arabidopsis Sequence Match ( AT1G14170.1 )
(BLAST)

001: MASTLRNIHD QNVIASEDTV YRYLCPVKKT GSIIGKGGEI AKQIRSETKS NMRINEALPG CEERVVTMYS TNEELNHFGD DGELVCPALD ALFKVHDMVV
101: ADADQDDGTD DDNDLGEKQT VTVRMLVPSD QIGCVIGKGG QVIQNLRNDT NAQIRVIKDH LPACALTLSH DELLLIIGEP LVVREALYQV ASLLHDNPSR
201: FQHLLLSSSS SSMHQPGAML MSAALTSSHR NYAVRRDIAD AREFCVCFIC PAENVGGVIG KGGGFINQIR QETGATIRVN TSETDDDDCI IFISSKEFYE
301: DQSPAVNAAI RLQQRCSEKV GKDANDLAIS TRLLVSSSQI GCLIGKGGAV ISEMRSVTRA NIRILQKEDV PKIAREDEEM VQITGSPDAA MKALTQVILR
401: LRANSFDMDH GLVLLPTSFP YIPQVTESSS KSKYAKRDDH SKLNSNSKRR NHVS

Arabidopsis Description

F7A19.25 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.