Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013963_P002 | Maize | nucleus | 85.62 | 83.95 |
| Os10t0495000-01 | Rice | nucleus | 69.25 | 72.7 |
| Zm00001d032597_P006 | Maize | golgi, plasma membrane | 86.88 | 70.49 |
| TraesCS1D01G161200.3 | Wheat | nucleus | 70.62 | 67.91 |
| TraesCS1A01G164200.3 | Wheat | nucleus | 70.88 | 67.42 |
| TraesCS1B01G181000.3 | Wheat | nucleus | 70.62 | 67.18 |
| HORVU1Hr1G043680.7 | Barley | nucleus | 68.12 | 66.87 |
| GSMUA_Achr3P21030_001 | Banana | nucleus | 40.75 | 48.95 |
| VIT_14s0006g02960.t01 | Wine grape | nucleus, plastid | 33.5 | 39.65 |
| KXG39277 | Sorghum | nucleus | 23.75 | 35.06 |
| Solyc03g034200.2.1 | Tomato | nucleus | 29.38 | 33.24 |
| OQU80050 | Sorghum | nucleus | 22.38 | 28.46 |
| KXG35952 | Sorghum | plastid | 21.0 | 27.01 |
| EES02175 | Sorghum | nucleus, plastid | 21.62 | 24.16 |
| KXG20038 | Sorghum | nucleus | 18.88 | 22.6 |
| EER94472 | Sorghum | cytosol | 11.25 | 19.91 |
| OQU88922 | Sorghum | nucleus, peroxisome, plastid | 14.75 | 18.32 |
| EES16283 | Sorghum | cytosol | 11.5 | 18.07 |
| EER94248 | Sorghum | nucleus | 11.75 | 15.99 |
| KXG29352 | Sorghum | cytosol | 9.88 | 15.31 |
| OQU91315 | Sorghum | plastid | 9.25 | 15.23 |
Protein Annotations
| Gene3D:3.30.1370.10 | Gene3D:3.30.310.210 | MapMan:35.1 | UniProt:A0A1B6QK16 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf |
| EnsemblPlants:KXG38256 | ProteinID:KXG38256 | ProteinID:KXG38256.1 | PFAM:PF00013 | PFscan:PS50084 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF130 | SMART:SM00322 | EnsemblPlantsGene:SORBI_3001G207000 | SUPFAM:SSF54791 | UniParc:UPI00081ADB89 | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:-:18893716..18900571
Molecular Weight (calculated)
87611.1 Da
IEP (calculated)
8.316
GRAVY (calculated)
-0.647
Length
800 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYGKSRRSN SKKRTYSNSE DRKRKRLNSR HDDTSMSSEP VETIYRILCP VKKIGSVLGR GGDVVKALRE ETKAKIRVAD PIPGADERVI IIFNYQNQPE
101: LTDEAAETKF SDGLGNMKPH CFAQDALLKI HDKIVADEIH DGVAHEEKSE SADDVTARIL VQGNQVGCLL GKGGSIIQQL RSDTGAGIRV LPSEDLPQCA
201: LKSDELVQIS GAPSLVRKAL YEISTRLHQH PRKENRPLEE IINASTQRKR ESPILLQHEN PMLPHLHSDH PPPIPLLDPY RSGLQYHVTE TEEFSIRILC
301: ASELIGSVIG KSGANVKRVE QQTGARIKVQ EIDKDASGES LIIVSSKEVP SEPISPAIEA LILLHDKVSA PSEKRHSSTR LVVPSSKVGC ILGEGGKVIT
401: EMRRRTGAEI RVYSKADKPK YLSFDDELVQ VAGPPAIARG ALTEIASRLR NRTLGVTSTA NNPPPFAPFD DPPVDMPSRK STLYGGPAND PPYGRPAIDP
501: LYGRPAIDPL YGRPAIDPPF GSHTNDRPYG RPAVVPPFGR PTNDPPYGRP ANDPPYGRPA NDPPYGRPAN DPYGRPTNNP PYGRPRPNES APRDPSDAYP
601: VDYFSKREYP SGSPMFTSNA PSAPYERYAA ATRFPTRELP SAFSPGVDHM SHRSYRAHVP ADSYSSRGTQ QLGITRDGNS DAYDYTETAG QIHGREDYRG
701: LTSATGRFLS TIELRIPNSS LESIVGVGGV NLAEIRQISG ARLRLHEAHA GSSESVVEIQ GTLEEAKAAQ SLLQGFISAN SRSIQQQPQS SRMPLYPSWG
101: LTDEAAETKF SDGLGNMKPH CFAQDALLKI HDKIVADEIH DGVAHEEKSE SADDVTARIL VQGNQVGCLL GKGGSIIQQL RSDTGAGIRV LPSEDLPQCA
201: LKSDELVQIS GAPSLVRKAL YEISTRLHQH PRKENRPLEE IINASTQRKR ESPILLQHEN PMLPHLHSDH PPPIPLLDPY RSGLQYHVTE TEEFSIRILC
301: ASELIGSVIG KSGANVKRVE QQTGARIKVQ EIDKDASGES LIIVSSKEVP SEPISPAIEA LILLHDKVSA PSEKRHSSTR LVVPSSKVGC ILGEGGKVIT
401: EMRRRTGAEI RVYSKADKPK YLSFDDELVQ VAGPPAIARG ALTEIASRLR NRTLGVTSTA NNPPPFAPFD DPPVDMPSRK STLYGGPAND PPYGRPAIDP
501: LYGRPAIDPL YGRPAIDPPF GSHTNDRPYG RPAVVPPFGR PTNDPPYGRP ANDPPYGRPA NDPPYGRPAN DPYGRPTNNP PYGRPRPNES APRDPSDAYP
601: VDYFSKREYP SGSPMFTSNA PSAPYERYAA ATRFPTRELP SAFSPGVDHM SHRSYRAHVP ADSYSSRGTQ QLGITRDGNS DAYDYTETAG QIHGREDYRG
701: LTSATGRFLS TIELRIPNSS LESIVGVGGV NLAEIRQISG ARLRLHEAHA GSSESVVEIQ GTLEEAKAAQ SLLQGFISAN SRSIQQQPQS SRMPLYPSWG
001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY
Arabidopsis Description
RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.