Factsheet for Solyc03g034200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g02960.t01	Wine grape	nucleus, plastid	56.72	59.32
GSMUA_Achr3P21030_001	Banana	nucleus	37.62	39.94
Solyc05g007810.2.1	Tomato	nucleus	26.73	35.53
Os10t0495000-01	Rice	nucleus	34.09	31.63
Solyc02g088120.2.1	Tomato	nucleus	22.91	30.86
Solyc02g067210.2.1	Tomato	nucleus	26.73	30.68
KXG38256	Sorghum	nucleus	33.24	29.38
Zm00001d013963_P002	Maize	nucleus	33.8	29.29
Solyc12g055790.1.1	Tomato	nucleus	10.04	28.51
TraesCS1D01G161200.3	Wheat	nucleus	32.53	27.64
TraesCS1A01G164200.3	Wheat	nucleus	32.81	27.59
HORVU1Hr1G043680.7	Barley	nucleus	31.54	27.36
TraesCS1B01G181000.3	Wheat	nucleus	32.53	27.35
Solyc04g077060.2.1	Tomato	nucleus	17.4	26.0
Solyc08g048500.2.1	Tomato	nucleus	22.49	25.77
Zm00001d032597_P006	Maize	golgi, plasma membrane	32.96	23.63
Solyc03g082980.2.1	Tomato	nucleus	22.07	23.35
Solyc01g106020.2.1	Tomato	plastid	20.37	22.29
Solyc11g010840.1.1	Tomato	plastid	18.39	21.21
Solyc05g041740.1.1	Tomato	plastid	6.22	20.95
Solyc01g090480.2.1	Tomato	nucleus	12.87	20.5
Solyc01g097010.2.1	Tomato	nucleus	10.47	20.39
Solyc09g066120.2.1	Tomato	nucleus	13.86	19.92
Solyc12g055780.1.1	Tomato	cytosol, nucleus	10.04	19.19
Solyc07g008490.2.1	Tomato	nucleus	12.59	18.46
Solyc05g042180.1.1	Tomato	plastid	6.79	17.58
Solyc06g084000.2.1	Tomato	nucleus	5.8	17.3
Solyc08g074330.1.1	Tomato	plastid	5.52	17.18
Solyc05g043210.1.1	Tomato	plastid	6.08	17.0
Solyc06g084010.2.1	Tomato	nucleus	6.65	14.55
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	6.36	14.06

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	UniProt:K4BFU2	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF130	SMART:SM00322	SUPFAM:SSF54791
EnsemblPlantsGene:Solyc03g034200.2	EnsemblPlants:Solyc03g034200.2.1	UniParc:UPI0002767D8B	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:5882116..5887877

Molecular Weight (calculated)

77149.6 Da

IEP (calculated)

8.947

GRAVY (calculated)

-0.700

Length

707 amino acids

Sequence
(BLAST)

001: MDEYKRNSLK QRSNPQFKRK GGSKNAKLNF SSHERSSENS QSSDTTYCIL CQSKKVGSVI GKGGSIIKAL REETQAKITV ADSVPGSDDR IVIISSPSTK
101: LARRQNNDKN NDNPETKEEN YSMEPHCAAQ DALLKVHNRI VEEDLLGVQN EDKSEAVIIT RLLVPNNLVG CLLGRKGDVI QKLRSETGAS IRVLSAEHLP
201: ACAMTTDELV QISGKPALVK KALYEVSTLL HQNPRKDKPI SSFPMVHGAQ GFHPPGPPME NMIPPGKPMW SQSKTNLNGM PPALGVGGYR NQLTGFGRAD
301: FDYGPPPSAG EAPGDFTMKI LCSAAKIGGV IGKGGFNVKQ LQQETGAGIH VEDVAPESDE RVIRVSSLES FWDPRSRTID AILQLQSKTS EFSDKGIVTT
401: RLLFPSNKVG CIIGQGGQVI NEMRRRTQAD IRVLSKDEKP RCASADEELV QISGSIGVAK DALVEISSRL RERCLRDANS KVESTHVRPL PGFVPSEDFR
501: SRDPQRSGVM GAGSSRRYEH LKGAVRECDH PSYPDLPIAT RFSNTRSPPE MKFPDHSYGT AKGTGGYNID EFAGSSARYQ DPRSIGPGFV DDIRGTSDRM
601: NAGHNVFHGS SENLNAGRPT FQGYGSPAGQ SSNIHQGAYH QNYAAQQSAY QSYPAKGGYP SGSPSQLPYQ NPNPHQAPYQ NINSQQHQHQ QAPPPYQNMA
701: AQGSYHY

Best Arabidopsis Sequence Match ( AT5G15270.1 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.