Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
nucleus: 24677780 plasma membrane: 27341663 |
msms PMID:
24677780
doi
State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EER94472 | Sorghum | cytosol | 96.37 | 94.03 |
Zm00001d029973_P001 | Maize | plasma membrane | 92.97 | 91.52 |
TraesCS1B01G229900.1 | Wheat | cytosol | 84.58 | 83.07 |
TraesCS1D01G218700.1 | Wheat | cytosol | 84.58 | 82.89 |
Os10t0564000-01 | Rice | cytosol | 85.94 | 82.75 |
TraesCS1A01G216900.1 | Wheat | cytosol | 83.67 | 82.0 |
HORVU1Hr1G055480.1 | Barley | plastid | 85.26 | 74.9 |
KRH02776 | Soybean | nucleus | 54.88 | 55.5 |
KRH19104 | Soybean | nucleus | 54.42 | 55.05 |
KRH12329 | Soybean | cytosol, nucleus | 53.51 | 53.39 |
KRH37335 | Soybean | cytosol, nucleus | 53.51 | 53.27 |
VIT_11s0052g00030.t01 | Wine grape | plastid | 56.01 | 53.0 |
Solyc07g008490.2.1 | Tomato | nucleus | 51.93 | 47.51 |
GSMUA_Achr8P14980_001 | Banana | cytosol | 56.92 | 44.82 |
PGSC0003DMT400076105 | Potato | plastid | 46.49 | 44.37 |
Bra019133.1-P | Field mustard | cytosol | 39.23 | 43.47 |
Solyc05g041740.1.1 | Tomato | plastid | 20.41 | 42.86 |
AT4G26000.1 | Thale cress | cytosol | 47.39 | 42.22 |
GSMUA_Achr11P... | Banana | mitochondrion | 54.42 | 41.88 |
CDY49999 | Canola | cytosol, endoplasmic reticulum, nucleus | 45.12 | 41.46 |
CDX92741 | Canola | cytosol | 46.03 | 41.18 |
CDY42768 | Canola | cytosol | 45.8 | 40.97 |
Solyc08g074330.1.1 | Tomato | plastid | 20.41 | 39.65 |
PGSC0003DMT400046406 | Potato | cytosol | 52.38 | 39.15 |
Solyc05g043210.1.1 | Tomato | plastid | 21.54 | 37.55 |
Bra013940.1-P | Field mustard | cytosol | 34.92 | 36.24 |
CDX89376 | Canola | cytosol | 34.92 | 36.24 |
Zm00001d015093_P001 | Maize | cytosol | 37.64 | 35.47 |
CDY65294 | Canola | cytosol | 34.92 | 35.08 |
Solyc05g042180.1.1 | Tomato | plastid | 20.86 | 33.7 |
Zm00001d030968_P006 | Maize | extracellular | 37.19 | 32.28 |
Solyc05g043200.1.1 | Tomato | nucleus, peroxisome, plastid | 21.32 | 29.38 |
Zm00001d003290_P002 | Maize | mitochondrion | 13.61 | 26.2 |
Zm00001d013712_P003 | Maize | cytosol, plastid, vacuole | 38.78 | 26.03 |
Zm00001d029328_P002 | Maize | nucleus | 24.26 | 19.78 |
Zm00001d014180_P004 | Maize | cytosol | 28.8 | 19.63 |
Zm00001d010815_P001 | Maize | mitochondrion | 14.51 | 18.29 |
Zm00001d024270_P001 | Maize | nucleus | 20.86 | 14.56 |
Zm00001d049390_P001 | Maize | nucleus | 19.95 | 13.95 |
Zm00001d046033_P001 | Maize | nucleus | 19.27 | 12.74 |
Zm00001d009014_P004 | Maize | nucleus | 18.59 | 11.63 |
Zm00001d037055_P003 | Maize | nucleus | 19.5 | 11.62 |
Zm00001d019538_P002 | Maize | plastid | 17.23 | 11.26 |
Zm00001d013963_P002 | Maize | nucleus | 19.5 | 10.54 |
Zm00001d006055_P002 | Maize | plastid | 14.29 | 10.1 |
Zm00001d032597_P006 | Maize | golgi, plasma membrane | 20.41 | 9.13 |
Protein Annotations
EnsemblPlants:Zm00001d000030_P001 | EnsemblPlants:Zm00001d000030_T001 | EnsemblPlantsGene:Zm00001d000030 | Gene3D:3.30.1370.10 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf |
PANTHER:PTHR10288 | PANTHER:PTHR10288:SF132 | PFAM:PF00013 | PFscan:PS50084 | SEG:seg | SMART:SM00322 |
SUPFAM:SSF54791 | UniParc:UPI0002220BB7 | UniProt:A0A1X7YE51 | MapMan:35.1 | : | : |
Description
RNA-binding KH domain-containing protein PEPPER
Coordinates
chrB73V4_ctg182:-:118656..122184
Molecular Weight (calculated)
47029.8 Da
IEP (calculated)
5.657
GRAVY (calculated)
-0.126
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEPSAAAVT AAEVGEESDA AAMEEVAAAA KRWPGWPGDS VFRLVVPVLK VGSIIGRKGE LIKRLVEGTK ARVRILEGPV GATERIVLVS GKEDPGLELS
101: PAMDALMRVF KRVIGITDGA AEGTQAAATP GVCAARLLVP GAQAINLIGK QGATIKAIQE STGATIRVIS VDEHERPFYV TDDERIVEIQ GDTEKVLKAL
201: QAVSNHLRKF LVDHSVLPLF EKTNTAVSQD HNVGWSDMSH PSIGSAQVNQ PPSVVDEYIL PVKRDTLYLE RETLLDHNIH RSGVSLYGRD PALSTLRPPG
301: IHGAGPLLTQ ITQTMQIPLT YAEDIIGVKG ANIAYIRANS GAVVTIQESL GSPDDITVEI KGTSSQVQAA QQLIQDSLAA HREPVRSSYV GAGLDSLYRS
401: SYSQYGSSTY PSSSLPSYSS IDDVSRYPSS GLGGYGSSYR Y
101: PAMDALMRVF KRVIGITDGA AEGTQAAATP GVCAARLLVP GAQAINLIGK QGATIKAIQE STGATIRVIS VDEHERPFYV TDDERIVEIQ GDTEKVLKAL
201: QAVSNHLRKF LVDHSVLPLF EKTNTAVSQD HNVGWSDMSH PSIGSAQVNQ PPSVVDEYIL PVKRDTLYLE RETLLDHNIH RSGVSLYGRD PALSTLRPPG
301: IHGAGPLLTQ ITQTMQIPLT YAEDIIGVKG ANIAYIRANS GAVVTIQESL GSPDDITVEI KGTSSQVQAA QQLIQDSLAA HREPVRSSYV GAGLDSLYRS
401: SYSQYGSSTY PSSSLPSYSS IDDVSRYPSS GLGGYGSSYR Y
001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL
Arabidopsis Description
PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.