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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular, nucleus, cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
extracellular: 20408568
nucleus: 24677780
plasma membrane: 27341663
msms PMID: 24677780 doi
B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni
State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER94472 Sorghum cytosol 96.37 94.03
Zm00001d029973_P001 Maize plasma membrane 92.97 91.52
TraesCS1B01G229900.1 Wheat cytosol 84.58 83.07
TraesCS1D01G218700.1 Wheat cytosol 84.58 82.89
Os10t0564000-01 Rice cytosol 85.94 82.75
TraesCS1A01G216900.1 Wheat cytosol 83.67 82.0
HORVU1Hr1G055480.1 Barley plastid 85.26 74.9
KRH02776 Soybean nucleus 54.88 55.5
KRH19104 Soybean nucleus 54.42 55.05
KRH12329 Soybean cytosol, nucleus 53.51 53.39
KRH37335 Soybean cytosol, nucleus 53.51 53.27
VIT_11s0052g00030.t01 Wine grape plastid 56.01 53.0
Solyc07g008490.2.1 Tomato nucleus 51.93 47.51
GSMUA_Achr8P14980_001 Banana cytosol 56.92 44.82
PGSC0003DMT400076105 Potato plastid 46.49 44.37
Bra019133.1-P Field mustard cytosol 39.23 43.47
Solyc05g041740.1.1 Tomato plastid 20.41 42.86
AT4G26000.1 Thale cress cytosol 47.39 42.22
GSMUA_Achr11P... Banana mitochondrion 54.42 41.88
CDY49999 Canola cytosol, endoplasmic reticulum, nucleus 45.12 41.46
CDX92741 Canola cytosol 46.03 41.18
CDY42768 Canola cytosol 45.8 40.97
Solyc08g074330.1.1 Tomato plastid 20.41 39.65
PGSC0003DMT400046406 Potato cytosol 52.38 39.15
Solyc05g043210.1.1 Tomato plastid 21.54 37.55
Bra013940.1-P Field mustard cytosol 34.92 36.24
CDX89376 Canola cytosol 34.92 36.24
Zm00001d015093_P001 Maize cytosol 37.64 35.47
CDY65294 Canola cytosol 34.92 35.08
Solyc05g042180.1.1 Tomato plastid 20.86 33.7
Zm00001d030968_P006 Maize extracellular 37.19 32.28
Solyc05g043200.1.1 Tomato nucleus, peroxisome, plastid 21.32 29.38
Zm00001d003290_P002 Maize mitochondrion 13.61 26.2
Zm00001d013712_P003 Maize cytosol, plastid, vacuole 38.78 26.03
Zm00001d029328_P002 Maize nucleus 24.26 19.78
Zm00001d014180_P004 Maize cytosol 28.8 19.63
Zm00001d010815_P001 Maize mitochondrion 14.51 18.29
Zm00001d024270_P001 Maize nucleus 20.86 14.56
Zm00001d049390_P001 Maize nucleus 19.95 13.95
Zm00001d046033_P001 Maize nucleus 19.27 12.74
Zm00001d009014_P004 Maize nucleus 18.59 11.63
Zm00001d037055_P003 Maize nucleus 19.5 11.62
Zm00001d019538_P002 Maize plastid 17.23 11.26
Zm00001d013963_P002 Maize nucleus 19.5 10.54
Zm00001d006055_P002 Maize plastid 14.29 10.1
Zm00001d032597_P006 Maize golgi, plasma membrane 20.41 9.13
Protein Annotations
EnsemblPlants:Zm00001d000030_P001EnsemblPlants:Zm00001d000030_T001EnsemblPlantsGene:Zm00001d000030Gene3D:3.30.1370.10GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488InterPro:IPR036612InterPro:KH_domInterPro:KH_dom_type_1InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288PANTHER:PTHR10288:SF132PFAM:PF00013PFscan:PS50084SEG:segSMART:SM00322
SUPFAM:SSF54791UniParc:UPI0002220BB7UniProt:A0A1X7YE51MapMan:35.1::
Description
RNA-binding KH domain-containing protein PEPPER
Coordinates
chrB73V4_ctg182:-:118656..122184
Molecular Weight (calculated)
47029.8 Da
IEP (calculated)
5.657
GRAVY (calculated)
-0.126
Length
441 amino acids
Sequence
(BLAST)
001: MAEPSAAAVT AAEVGEESDA AAMEEVAAAA KRWPGWPGDS VFRLVVPVLK VGSIIGRKGE LIKRLVEGTK ARVRILEGPV GATERIVLVS GKEDPGLELS
101: PAMDALMRVF KRVIGITDGA AEGTQAAATP GVCAARLLVP GAQAINLIGK QGATIKAIQE STGATIRVIS VDEHERPFYV TDDERIVEIQ GDTEKVLKAL
201: QAVSNHLRKF LVDHSVLPLF EKTNTAVSQD HNVGWSDMSH PSIGSAQVNQ PPSVVDEYIL PVKRDTLYLE RETLLDHNIH RSGVSLYGRD PALSTLRPPG
301: IHGAGPLLTQ ITQTMQIPLT YAEDIIGVKG ANIAYIRANS GAVVTIQESL GSPDDITVEI KGTSSQVQAA QQLIQDSLAA HREPVRSSYV GAGLDSLYRS
401: SYSQYGSSTY PSSSLPSYSS IDDVSRYPSS GLGGYGSSYR Y
Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)
001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL
Arabidopsis Description
PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.