Factsheet for VIT_01s0026g02650.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0108g01040.t01	Wine grape	nucleus	69.23	72.26
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	63.99	69.06
PGSC0003DMT400047374	Potato	nucleus	64.16	68.86
Solyc05g007810.2.1	Tomato	nucleus	62.59	67.29
Zm00001d029328_P002	Maize	nucleus	61.54	65.06
VIT_09s0002g00070.t01	Wine grape	mitochondrion	14.51	64.84
KXG39277	Sorghum	nucleus	60.49	63.84
Os03t0376800-02	Rice	nucleus	60.49	63.84
GSMUA_Achr6P10750_001	Banana	nucleus	58.92	63.35
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	44.93	62.84
TraesCS4A01G150800.1	Wheat	nucleus	59.09	62.71
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	25.7	62.29
CDX81615	Canola	cytosol	49.48	61.66
CDY33769	Canola	nucleus	52.27	61.65
Bra026852.1-P	Field mustard	nucleus	52.27	61.65
AT1G14170.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	50.87	60.75
CDY49107	Canola	nucleus	49.13	59.16
CDY39336	Canola	mitochondrion	48.78	58.99
HORVU4Hr1G049680.1	Barley	nucleus	59.97	58.93
TraesCS4D01G160700.2	Wheat	nucleus	57.52	58.44
TraesCS4B01G166500.2	Wheat	nucleus	57.34	58.26
CDY03018	Canola	nucleus	47.55	58.12
AT2G03110.1	Thale cress	cytosol	15.21	56.86
CDY45180	Canola	cytosol	40.73	55.08
Bra024789.1-P	Field mustard	cytosol	35.84	54.52
VIT_14s0006g00030.t01	Wine grape	cytosol	26.57	53.71
CDY51849	Canola	cytosol	8.57	46.23
VIT_14s0006g02960.t01	Wine grape	nucleus, plastid	35.49	30.03
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	29.55	27.13
VIT_03s0038g00420.t01	Wine grape	plastid	29.55	26.08
VIT_15s0021g01940.t01	Wine grape	nucleus	15.73	26.01
VIT_18s0001g08280.t01	Wine grape	cytosol	31.64	25.82
VIT_09s0054g00450.t01	Wine grape	plastid	30.59	24.86
VIT_07s0141g00800.t01	Wine grape	cytosol	18.36	24.25
VIT_16s0098g01660.t01	Wine grape	nucleus	27.27	23.6
VIT_14s0081g00440.t01	Wine grape	cytosol	19.23	21.53
VIT_11s0052g00030.t01	Wine grape	plastid	17.31	21.24

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EMBL:AM478187	ProteinID:CAN81693	ProteinID:CAN81693.1
ProteinID:CCB56531	ProteinID:CCB56531.1	UniProt:F6HPQ0	EMBL:FN596002	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF149	SMART:SM00322	SUPFAM:SSF54791
TIGR:TC60845	UniParc:UPI000210882F	ArrayExpress:VIT_01s0026g02650	EnsemblPlantsGene:VIT_01s0026g02650	EnsemblPlants:VIT_01s0026g02650.t01	unigene:Vvi.2214
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:12388484..12393707

Molecular Weight (calculated)

61654.5 Da

IEP (calculated)

6.738

GRAVY (calculated)

-0.466

Length

572 amino acids

Sequence
(BLAST)

001: MFSYLYERPL GVFSFLYSTR EKISLLMAGQ RNDYGKRSHS QSDYGGNGGS KRRNPGDDKE QHGIGVEDTV YRYLCPVRKI GSIIGRGGDI AKQLRSETKS
101: NIRIGETMPG CEERVVTIYS SSEETNPFGD TGELVSPAQD ALFRVHDRIV AGELPADEEP EEAQQVTVRM LVPSDQIGCV IGKGGQVIQN IRSETRAQIR
201: ILKDEHLPPC ALSSDELLQI IGDASVVRKA LHQLASRLHE NPSRSQHLLL SSSPNMYQSG GTFMTPNIDA PLVGVAPLMG SYGGYKGDTG DWSHSYYSAR
301: RDESSAKEFS LRLVCPTGNI GGVIGKGGGI IKQIRQESGA SIKVDSSSAE GDDCIIFISA KEFFEDPSPT IDAALRLQPR CSEKAERESS DSVVTTRLLV
401: PSSRIGCLIG KGGAIISEMR SVTRANIRIL SKENLPKVAS EDDEMVQITG ELNVASNALL QVTLRLKANL FEREGAIAAI PPTLPYLPMS DMSDGSKYGS
501: RDSQPRERGF SSYSGGYGSS DLAPSDRYGS YGGSQSGGGN GYGAYSGYSS SRSGSTGLSS QGRVSHGKHH GY

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.