Factsheet for VIT_09s0054g00450.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g00130.t01
VIT_01s0026g02200.t01
VIT_04s0008g05470.t01
VIT_17s0000g05020.t01
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51580.1	VIT_01s0011g00130.t01	AT1G69170.1	21798944
AT1G51580.1	VIT_17s0000g05020.t01	AT1G69170.1	21798944
AT1G51580.1	VIT_01s0026g02200.t01	AT1G69690.1	21798944
AT1G51580.1	VIT_04s0008g05470.t01	AT2G25490.1	21798944
AT1G51580.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47290	Soybean	mitochondrion, nucleus	50.28	63.33
KRH44614	Soybean	mitochondrion, nucleus	49.01	61.06
Solyc12g055780.1.1	Tomato	cytosol, nucleus	31.25	59.46
PGSC0003DMT400074198	Potato	plastid	36.36	57.66
Solyc12g055790.1.1	Tomato	nucleus	18.32	51.81
AT1G51580.1	Thale cress	cytosol, plastid	44.74	50.72
GSMUA_Achr10P...	Banana	nucleus	47.87	50.0
CDY52947	Canola	plastid	40.06	48.96
CDY46555	Canola	plastid	40.34	48.88
Bra014290.1-P	Field mustard	plastid	40.2	48.71
Os09t0498600-01	Rice	plastid	39.91	45.62
KXG35952	Sorghum	plastid	39.49	44.69
TraesCS5B01G276400.1	Wheat	plastid	38.64	43.52
Zm00001d006055_P002	Maize	plastid	38.21	43.11
TraesCS5D01G284200.4	Wheat	plastid	38.35	43.06
TraesCS5A01G276800.5	Wheat	plastid	38.35	43.06
HORVU5Hr1G075110.3	Barley	mitochondrion	38.35	41.93
VIT_03s0038g00420.t01	Wine grape	plastid	37.22	40.43
VIT_18s0001g08280.t01	Wine grape	cytosol	36.93	37.09
VIT_09s0002g00070.t01	Wine grape	mitochondrion	6.53	35.94
VIT_14s0108g01040.t01	Wine grape	nucleus	25.43	32.66
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	10.65	31.78
VIT_01s0026g02650.t01	Wine grape	nucleus	24.86	30.59
VIT_14s0006g02960.t01	Wine grape	nucleus, plastid	27.7	28.85
VIT_15s0021g01940.t01	Wine grape	nucleus	14.06	28.61
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	24.29	27.45
VIT_14s0006g00030.t01	Wine grape	cytosol	10.65	26.5
VIT_16s0098g01660.t01	Wine grape	nucleus	24.86	26.48
VIT_07s0141g00800.t01	Wine grape	cytosol	11.22	18.24
VIT_11s0052g00030.t01	Wine grape	plastid	11.79	17.81
VIT_14s0081g00440.t01	Wine grape	cytosol	12.5	17.22

Protein Annotations

EntrezGene:100251267	wikigene:100251267	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	ProteinID:CBI18466
ProteinID:CBI18466.3	UniProt:D7SS34	EMBL:FN594972	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EntrezGene:LOC100251267
wikigene:LOC100251267	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF174	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI0001984003	ArrayExpress:VIT_09s0054g00450	EnsemblPlantsGene:VIT_09s0054g00450	EnsemblPlants:VIT_09s0054g00450.t01	unigene:Vvi.16672
RefSeq:XP_002264125	RefSeq:XP_002264125.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:-:20995516..21007371

Molecular Weight (calculated)

74335.1 Da

IEP (calculated)

7.564

GRAVY (calculated)

-0.297

Length

704 amino acids

Sequence
(BLAST)

001: MDSSSLPKRL PADSSTAASA EPTAKRRNQP TATSAASAAT SSPPTVVAAG AAKPQVLFRI LCPATKTGGV IGKGGAIIRQ FREDTGAKIR IDDSVLGCDE
101: RVILIVADAV KSKREASAIC GAEANDGEES ANLSNSSPNP VAVDDDESSP AQQALVRVFE RILKVDEERE EKEKKEDLGN VAVCCRLLAP SNQVGCVLGR
201: GGKIVEKIRQ ESGAQIRVLP KDHIPACASP GDELIQITGT FPAVRKALLL VSSCLQDNPR ADATNSAAAK PTGGMLHGNG MPGQLDSFPQ RGYGSSLHGP
301: DYHSRGYSSM PGPENIGANH RMVLEEEVVF KLLCHFEKVG SLIGKGGSII RFLQSETGAS IKIADAAPDS DERVVVISAR ENLEQKHSPA QDAVIRVHCR
401: IAEIGFEPGA AVVARLLVHS QQIGCLLGKG GIIISEMRRA TGASIRIFAK EQVPKCGSQN DELVQVIGSL QSVQDALFRI TSRIRETIFP LKPSISNVNG
501: PPYMSSFPEI PPPMFRPRHD PASPGHYSSP VGVPHGIDRS AVPGHPLDHQ SSFSHGVDRI GPSNLDRAPY PYGGDRPGHG PPFDRPSSSP RMWTQGVSGN
601: LRGTDVGSGS LASRNGPPGS GSQAPNITTT TVEVAVPQAL LSHVYGENNS NLNQIRQISG ARVVIQDPRT GSSEGVVVVS GTPDQTRAAQ SLVQAFILSE
701: QMTT

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.