Factsheet for Bra006294.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78623	Canola	nucleus	99.17	99.17
AT5G15270.2	Thale cress	nucleus	78.83	86.31
Bra008709.1-P	Field mustard	nucleus	73.5	85.3
VIT_14s0108g01040.t01	Wine grape	nucleus	57.0	62.41
KRG93559	Soybean	nucleus	56.5	61.86
KRH40065	Soybean	nucleus	55.5	61.67
KRH01196	Soybean	nucleus	55.5	61.33
KRH18467	Soybean	nucleus	55.67	60.95
KRH58152	Soybean	cytosol	12.83	60.63
PGSC0003DMT400003371	Potato	nucleus	53.67	59.52
PGSC0003DMT400064701	Potato	nucleus	53.83	58.2
VIT_09s0002g00070.t01	Wine grape	mitochondrion	12.33	57.81
Solyc02g088120.2.1	Tomato	nucleus	46.5	53.14
Solyc02g067210.2.1	Tomato	nucleus	53.5	52.11
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	20.33	51.69
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	35.17	51.59
Bra026852.1-P	Field mustard	nucleus	40.83	50.52
VIT_14s0006g00030.t01	Wine grape	cytosol	22.17	47.0
Bra024789.1-P	Field mustard	cytosol	27.83	44.41
Bra013302.1-P	Field mustard	nucleus	24.17	24.74
Bra025032.1-P	Field mustard	nucleus	26.0	24.15
Bra001111.1-P	Field mustard	cytosol	14.5	22.31
Bra014290.1-P	Field mustard	plastid	20.83	21.51
Bra003085.1-P	Field mustard	nucleus	22.83	21.44
Bra022624.1-P	Field mustard	nucleus	23.0	20.88
Bra030226.1-P	Field mustard	plastid	21.0	20.32
Bra013940.1-P	Field mustard	cytosol	14.17	20.0
Bra038508.1-P	Field mustard	cytosol, plastid	21.0	19.72
Bra019133.1-P	Field mustard	cytosol	12.33	18.59
Bra024292.1-P	Field mustard	nucleus	24.83	17.39

Protein Annotations

EnsemblPlants:Bra006294.1	EnsemblPlants:Bra006294.1-P	EnsemblPlantsGene:Bra006294	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	PFAM:PF00013	PFscan:PS50084	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000253FC13	UniProt:M4CQ05	MapMan:35.1	:

Description

AT5G15270 (E=8e-225) | KH domain-containing protein

Coordinates

chrA03:+:2898276..2900873

Molecular Weight (calculated)

65354.3 Da

IEP (calculated)

7.546

GRAVY (calculated)

-0.467

Length

600 amino acids

Sequence
(BLAST)

001: MSPDHRDSHR KRSRPHSDDD DNGGSKRRHR GGDDRDSHTI DRDDTVFRYL CPVKKIGSVI GRGGDIVKQL RMETRAKIKI GEAIPGCDER VITIYSASDE
101: TNAFGDDGEK ALSPAQDALF KIHDRVAADD ARRSEDSSEG EQQAIAKLLV PSDQIGCILG RGGQIVQNIR SETGAQIRII KDRNMPLCAL SSDELIQISG
201: EVLLVKKALH QIAARLHENP SRTQNLLSSA VAGGYPSGSL MSHAGGPRIV GIAPLMGSYG GYKSEAGDFA RPLYEARRNE PPATDFYIRL VSPVENIASV
301: IGKGGALINQ LRQETRATIK VDSARTEGND CLITISAREV FDDAYSPTIE AAMRLQPKCS EKIERDSGLV SFTTRILVPS SRIGCLLGKG GAIITEMRRM
401: TRANIRVLGK ENLPKVASED DEMVQISGEL DVAKEALLQI TSRLRANVFD REGAVSAIMP VLPYVPVAPD TGDRLDYDRR DSRRPERGNH YPGGYGSSGL
501: SSEYSPYGAP VGGSSSTPYG VYGGGYASGR SGSSGRCTTH TCYLLPYNSL VVDPYHGFCH TGYPAIHQPI DAETMITRSY WWVMKKCEIL KPDAYPTAHS

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.