Factsheet for GSMUA_Achr6P03670_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	79.57	74.96
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	60.83	63.56
Solyc08g048500.2.1	Tomato	nucleus	55.3	58.35
KRH42565	Soybean	nucleus	55.76	58.08
PGSC0003DMT400076798	Potato	nucleus	55.3	58.06
KRH58669	Soybean	endoplasmic reticulum, nucleus	55.3	57.97
OQU80050	Sorghum	nucleus	53.76	55.64
TraesCS3B01G580700.1	Wheat	nucleus	53.92	55.63
TraesCS3D01G519700.1	Wheat	nucleus	53.76	55.47
TraesCS3A01G512500.1	Wheat	nucleus	53.61	55.31
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	53.46	55.06
HORVU5Hr1G121900.1	Barley	nucleus	53.46	55.06
TraesCS4A01G333900.1	Wheat	nucleus	53.15	54.75
Zm00001d024270_P001	Maize	nucleus	53.0	54.59
Zm00001d049390_P001	Maize	nucleus	52.84	54.52
TraesCS5D01G538200.3	Wheat	nucleus	52.53	54.29
TraesCS5B01G551800.1	Wheat	nucleus	52.38	54.04
CDX99470	Canola	nucleus	21.81	52.4
CDX77643	Canola	nucleus	50.69	51.64
Bra025032.1-P	Field mustard	nucleus	50.84	51.24
CDY33460	Canola	nucleus	50.23	51.01
CDX78846	Canola	nucleus	43.16	48.95
AT4G18375.2	Thale cress	nucleus	45.31	48.68
Bra013302.1-P	Field mustard	nucleus	43.32	48.12
CDX99471	Canola	nucleus	15.67	47.44
AT5G46190.2	Thale cress	cytosol	50.08	47.31
GSMUA_Achr6P10750_001	Banana	nucleus	26.42	32.33
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	26.11	32.08
GSMUA_Achr3P21030_001	Banana	nucleus	28.11	27.48
GSMUA_Achr6P13890_001	Banana	cytosol	26.42	26.26
GSMUA_Achr10P...	Banana	cytosol	25.96	25.53
GSMUA_Achr2P15270_001	Banana	nucleus	25.19	23.6
GSMUA_Achr10P...	Banana	nucleus	24.27	23.44
GSMUA_Achr7P01590_001	Banana	nucleus	14.13	20.91
GSMUA_Achr5P03200_001	Banana	cytosol	7.07	17.36
GSMUA_Achr11P...	Banana	mitochondrion	13.36	15.18
GSMUA_Achr8P14980_001	Banana	cytosol	12.9	15.0

Protein Annotations

EnsemblPlants:GSMUA_Achr6P03670_001	EnsemblPlants:GSMUA_Achr6T03670_001	EnsemblPlantsGene:GSMUA_Achr6G03670_001	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF137	PFAM:PF00013	PFscan:PS50084	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002950DC1	UniProt:M0T3W5	MapMan:35.1	:

Description

Putative KH domain-containing protein At4g18375 [Source:GMGC_GENE;Acc:GSMUA_Achr6G03670_001]

Coordinates

chr6:+:2505689..2512415

Molecular Weight (calculated)

70663.5 Da

IEP (calculated)

6.865

GRAVY (calculated)

-0.259

Length

651 amino acids

Sequence
(BLAST)

001: MRTEVTVIVS YPRDSYFGFF HSQTDFCFQV MVDIGKRQQR DNDSEGKQQK KRLVNNDGTR DSELVVYRIL CPLGVIGSVI GKSGKIINSI RQETNAKIKI
101: VDPFPGADKR VITIYCYVKD KNPVDVDEDI LRPLCPAQDA LLKIHDAIVN ALDNSNEFEN KQKEGVYILV PASQAANIIG KSGSIIKKLR SKTNANIKIT
201: PKDPSDATHS CAMSFDNFLQ ITGDAEAIKR ALTTVSAIMY KFSPKEEIPL DSSVPDLPHI LIPSDVPIIP AGSIYPTADT ILPPGSLPPV IAATHQASEI
301: PGFIDASNVW PMYPSTLPVV PGYGGPARSE DLVLRVLCPF DKVGRVIGKQ GNTIKSIRQS SGAKINVDDT RDDTDECTIT ITSKESSNDV KSAAVEAVLL
401: LQEKINDQDD DSVNIRLLVP SKVIGCLIGK SGSIINDMRK STKANIYISK GEKPKRAASD EELVEVSGEV GKLRDALVQI ILRLREDALK DKDGNQNAQK
501: DSNQKVPPVD TLHSNSLSVP PVLPTIPPLA PLNYGQRAET ESGMGIFSGN NLYGYSSLQA GENAFGPLSS FSSNTYGGFP TYIEVVIPAN ALAKVMGKGG
601: TNVDNIRKIS GAHIEIVDSK ASRFERIARI SGTPDQKRSA ENLIQAFIMS T

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.