CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78846	Canola	nucleus	95.2	44.95
Bra013302.1-P	Field mustard	nucleus	95.57	44.2
AT4G18375.2	Thale cress	nucleus	71.59	32.01
CDY33460	Canola	nucleus	68.63	29.02
CDX77643	Canola	nucleus	67.9	28.8
KRH58669	Soybean	endoplasmic reticulum, nucleus	59.04	25.76
KRH42565	Soybean	nucleus	59.41	25.76
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	58.67	25.52
Solyc08g048500.2.1	Tomato	nucleus	57.56	25.28
PGSC0003DMT400076798	Potato	nucleus	57.56	25.16
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	52.4	21.81
OQU80050	Sorghum	nucleus	48.71	20.99
Zm00001d024270_P001	Maize	nucleus	47.97	20.57
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	52.4	20.55
Zm00001d049390_P001	Maize	nucleus	47.6	20.44
TraesCS3A01G512500.1	Wheat	nucleus	47.6	20.44
HORVU5Hr1G121900.1	Barley	nucleus	47.6	20.41
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	47.6	20.41
TraesCS3B01G580700.1	Wheat	nucleus	47.23	20.29
TraesCS3D01G519700.1	Wheat	nucleus	46.86	20.13
TraesCS5B01G551800.1	Wheat	nucleus	46.49	19.97
TraesCS5D01G538200.3	Wheat	nucleus	46.13	19.84
TraesCS4A01G333900.1	Wheat	nucleus	45.76	19.62
CDY51849	Canola	cytosol	6.64	16.98
CDY45180	Canola	cytosol	18.45	11.82
CDX84522	Canola	nucleus	31.37	11.47
CDY60930	Canola	nucleus	22.51	11.47
CDX69536	Canola	nucleus	22.14	11.28
CDY03018	Canola	nucleus	18.82	10.9
CDY56908	Canola	nucleus	25.09	10.69
CDX81615	Canola	cytosol	18.08	10.68
CDY49453	Canola	nucleus	25.09	10.59
CDY25609	Canola	cytosol	23.99	10.47
CDX96185	Canola	nucleus	24.72	10.45
CDY52947	Canola	plastid	22.14	10.42
CDY27030	Canola	nucleus	25.46	10.38
CDY49107	Canola	nucleus	18.08	10.32
CDY33769	Canola	nucleus	18.45	10.31
CDX89490	Canola	cytosol	23.25	10.18
CDY46555	Canola	plastid	21.77	10.15
CDY39336	Canola	mitochondrion	16.97	9.73
CDX70604	Canola	nucleus	20.3	9.48
CDY13742	Canola	mitochondrion	21.77	9.42
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	21.77	9.35
CDX78623	Canola	nucleus	20.66	9.33
CDX92741	Canola	cytosol	10.7	5.88
CDY42768	Canola	cytosol	10.7	5.88
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	8.86	5.0
CDX89376	Canola	cytosol	7.75	4.94
CDX74180	Canola	cytosol	9.96	4.8
CDY40663	Canola	cytosol	9.96	4.8
CDY65294	Canola	cytosol	7.75	4.78
CDY64706	Canola	nucleus	1.48	0.99
CDX99471	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078EBJ4	EnsemblPlants:CDX99470	ProteinID:CDX99470
ProteinID:CDX99470.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00107818001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF137	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EDE891	:

Description

BnaC01g10820D

Coordinates

chrLK031910:-:983740..985240

Molecular Weight (calculated)

29206.4 Da

IEP (calculated)

4.750

GRAVY (calculated)

-0.247

Length

271 amino acids

Sequence
(BLAST)

001: MREASGSRIE VNKANHGDDE CVIIVTATES PDDMKSMAVE AILLLQEKIS DDIDEETVKM QLLVPSKVIG CIIGKSGSVI NQIRKRTNAS IRISKGNNDD
101: LVEVSGEVSS VRDALIQIVL RLREDVLGDR GSVSARNPPA ARSDHSEYAS VDFDQRRETG ESSLGMVSSD RFYGYESSFP ATDHGLVSVG PYSYGGLYQS
201: SALEILVPAS AVSKVIGKGG GNLENIRRIS GAMVEFSDSK TSHGDRIALV SGTPEQMRSA ENLFQAFIMS T

Best Arabidopsis Sequence Match ( AT4G18375.2 )
(BLAST)

001: MVERKKRKQI QRNNSESNRN QKRRISHDKI NRDELVVYRI LCPIDVVGGV IGKSGKVINA IRHNTKAKIK VFDQLHGCSQ RVITIYCSVK EKQEEIGFTK
101: SENEPLCCAQ DALLKVYDAI VASDEENNTK TNVDRDDNKE CRLLVPFSQS SSLIGKAGEN IKRIRRRTRA SVKVVSKDVS DPSHVCAMEY DNVVVISGEP
201: ESVKQALFAV SAIMYKINPR ENIPLDSTSQ DVPAASVIVP SDLSNSVYPQ TGFYSNQDHI LQQGAGVPSY FNALSVSDFQ GYAETAANPV PVFASSLPVT
301: HGFGGSSRSE ELVFKVLCPL CNIMRVIGKG GSTIKRIREA SGSCIEVNDS RTKCGDDECV IIVTATESPD DMKSMAVEAV LLLQEYINDE DAENVKMQLL
401: VSSKVIGCVI GKSGSVINEI RKRTNANICI SKGKKDDLVE VSGEVSSVRD ALIQIVLRLR EDVLGDKDSV ATRKPPARTD NCSFLSGSSN AGYTLPSFMS
501: SMASTSGFHG YGSFPAGDNV LGSTGPYSYG RLPSSSALEI LIPAHAMSKV MGKGGGNLEN IRRISGAMIE ISASKTSHGD HIALLSGTLE QMRCAENLVQ
601: AFVMST

Arabidopsis Description

KH domain-containing protein At4g18375 [Source:UniProtKB/Swiss-Prot;Acc:P58223]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.