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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • cytosol 2
  • nucleus 2
  • peroxisome 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH42077 Soybean plastid 28.33 28.96
KRH49838 Soybean plastid 28.33 28.81
VIT_03s0038g00420.t01 Wine grape plastid 29.83 27.62
PGSC0003DMT400083772 Potato plastid 27.67 25.82
Solyc01g106020.2.1 Tomato plastid 27.17 25.23
KRH21739 Soybean plastid 29.33 24.62
AT5G64390.3 Thale cress nucleus 34.0 23.56
KRH10613 Soybean plastid 26.83 22.15
AT1G14170.3 Thale cress cytosol, mitochondrion, nucleus, plastid 17.5 21.92
AT5G15270.2 Thale cress nucleus 20.0 21.9
AT1G51580.1 Thale cress cytosol, plastid 22.0 21.26
AT2G22600.1 Thale cress mitochondrion 21.67 20.57
AT4G18375.2 Thale cress nucleus 20.17 19.97
AT2G03110.1 Thale cress cytosol 5.0 19.61
OQU88922 Sorghum nucleus, peroxisome, plastid 20.33 18.94
AT5G46190.2 Thale cress cytosol 21.67 18.87
AT5G53060.1 Thale cress nucleus 20.33 18.71
Zm00001d019538_P002 Maize plastid 20.33 18.07
AT4G26000.1 Thale cress cytosol 12.17 14.75
Os07t0439100-01 Rice cytosol 5.33 13.73
AT3G04610.2 Thale cress cytosol 12.0 12.48
Protein Annotations
Gene3D:3.30.1370.10Gene3D:3.30.310.210MapMan:35.1EntrezGene:830815ProteinID:AED91410.2ArrayExpress:AT5G09560
EnsemblPlantsGene:AT5G09560RefSeq:AT5G09560TAIR:AT5G09560RefSeq:AT5G09560-TAIR-GEnsemblPlants:AT5G09560.1TAIR:AT5G09560.1
Unigene:At.54786ncoils:CoilUniProt:F4KDY1GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005488GO:GO:0008150InterPro:IPR036612InterPro:KH_domInterPro:KH_dom_type_1InterPro:KH_dom_type_1_sf
RefSeq:NP_001318518.1PFAM:PF00013PFscan:PS50084PANTHER:PTHR10288PANTHER:PTHR10288:SF173SMART:SM00322
SUPFAM:SSF54791UniParc:UPI0008495E32SEG:seg:::
Description
RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G09560]
Coordinates
chr5:+:2967170..2969491
Molecular Weight (calculated)
66559.3 Da
IEP (calculated)
7.918
GRAVY (calculated)
-0.320
Length
600 amino acids
Sequence
(BLAST)
001: MEGKKFGAQS TARAPLPLPQ PPSAPPPEYV TFRILCNVSQ AGHVIGKHGG MVKKLHKSTE SSIWVEKTPL DDSPYRIIKI FGHVGSVSRV KLGVIVNNVS
101: NREKKEQEQE VEVSRAQYAL IRVFEALNFG DCTSSTVSCN LLMEGSHVVT VIGKNGELMQ RILEETGCNV QLRSHDLSIC TNPGDVVLKI EGNRLSAVMK
201: ALVSISSRLQ ACPPISTASL HAEAVPDALR RPMEYRSQQY REVDPHGSLH RHVEISQEDA LVRPFFRTIT QPRIDYLPHP SYDHRLITSA SKNPPVTIKQ
301: PLQASKDDIR QVDLKILCSN ESASVVIKTR SVTDASISVG DRHPDCDERL VTITAFEKTK DITSESQRAL VLVFSNMYEN ATAKVLDSGL TSSITARLVV
401: RSNQINCLLG EEGRIKTTIQ QRTGAFITVL NVEQNPKCVS ENNQVVQISG EFPNVREAIN QVTSMLREDL INQSFQRGSQ YAVNYSEDPF PELFSPTAGY
501: TPTFGRSSTM DPNDIFHYSS QASSRLWESP PPAAPRSVND GSGGLFSTRD DLVLTSGLKT VRYRVSEYDV CSMFGYGKDG HNRLLKSLRE VIVHIYILFT
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.