Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 2
- nucleus 2
- peroxisome 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH42077 | Soybean | plastid | 28.33 | 28.96 |
KRH49838 | Soybean | plastid | 28.33 | 28.81 |
VIT_03s0038g00420.t01 | Wine grape | plastid | 29.83 | 27.62 |
PGSC0003DMT400083772 | Potato | plastid | 27.67 | 25.82 |
Solyc01g106020.2.1 | Tomato | plastid | 27.17 | 25.23 |
KRH21739 | Soybean | plastid | 29.33 | 24.62 |
AT5G64390.3 | Thale cress | nucleus | 34.0 | 23.56 |
KRH10613 | Soybean | plastid | 26.83 | 22.15 |
AT1G14170.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 17.5 | 21.92 |
AT5G15270.2 | Thale cress | nucleus | 20.0 | 21.9 |
AT1G51580.1 | Thale cress | cytosol, plastid | 22.0 | 21.26 |
AT2G22600.1 | Thale cress | mitochondrion | 21.67 | 20.57 |
AT4G18375.2 | Thale cress | nucleus | 20.17 | 19.97 |
AT2G03110.1 | Thale cress | cytosol | 5.0 | 19.61 |
OQU88922 | Sorghum | nucleus, peroxisome, plastid | 20.33 | 18.94 |
AT5G46190.2 | Thale cress | cytosol | 21.67 | 18.87 |
AT5G53060.1 | Thale cress | nucleus | 20.33 | 18.71 |
Zm00001d019538_P002 | Maize | plastid | 20.33 | 18.07 |
AT4G26000.1 | Thale cress | cytosol | 12.17 | 14.75 |
Os07t0439100-01 | Rice | cytosol | 5.33 | 13.73 |
AT3G04610.2 | Thale cress | cytosol | 12.0 | 12.48 |
Protein Annotations
Gene3D:3.30.1370.10 | Gene3D:3.30.310.210 | MapMan:35.1 | EntrezGene:830815 | ProteinID:AED91410.2 | ArrayExpress:AT5G09560 |
EnsemblPlantsGene:AT5G09560 | RefSeq:AT5G09560 | TAIR:AT5G09560 | RefSeq:AT5G09560-TAIR-G | EnsemblPlants:AT5G09560.1 | TAIR:AT5G09560.1 |
Unigene:At.54786 | ncoils:Coil | UniProt:F4KDY1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf |
RefSeq:NP_001318518.1 | PFAM:PF00013 | PFscan:PS50084 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF173 | SMART:SM00322 |
SUPFAM:SSF54791 | UniParc:UPI0008495E32 | SEG:seg | : | : | : |
Description
RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G09560]
Coordinates
chr5:+:2967170..2969491
Molecular Weight (calculated)
66559.3 Da
IEP (calculated)
7.918
GRAVY (calculated)
-0.320
Length
600 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKKFGAQS TARAPLPLPQ PPSAPPPEYV TFRILCNVSQ AGHVIGKHGG MVKKLHKSTE SSIWVEKTPL DDSPYRIIKI FGHVGSVSRV KLGVIVNNVS
101: NREKKEQEQE VEVSRAQYAL IRVFEALNFG DCTSSTVSCN LLMEGSHVVT VIGKNGELMQ RILEETGCNV QLRSHDLSIC TNPGDVVLKI EGNRLSAVMK
201: ALVSISSRLQ ACPPISTASL HAEAVPDALR RPMEYRSQQY REVDPHGSLH RHVEISQEDA LVRPFFRTIT QPRIDYLPHP SYDHRLITSA SKNPPVTIKQ
301: PLQASKDDIR QVDLKILCSN ESASVVIKTR SVTDASISVG DRHPDCDERL VTITAFEKTK DITSESQRAL VLVFSNMYEN ATAKVLDSGL TSSITARLVV
401: RSNQINCLLG EEGRIKTTIQ QRTGAFITVL NVEQNPKCVS ENNQVVQISG EFPNVREAIN QVTSMLREDL INQSFQRGSQ YAVNYSEDPF PELFSPTAGY
501: TPTFGRSSTM DPNDIFHYSS QASSRLWESP PPAAPRSVND GSGGLFSTRD DLVLTSGLKT VRYRVSEYDV CSMFGYGKDG HNRLLKSLRE VIVHIYILFT
101: NREKKEQEQE VEVSRAQYAL IRVFEALNFG DCTSSTVSCN LLMEGSHVVT VIGKNGELMQ RILEETGCNV QLRSHDLSIC TNPGDVVLKI EGNRLSAVMK
201: ALVSISSRLQ ACPPISTASL HAEAVPDALR RPMEYRSQQY REVDPHGSLH RHVEISQEDA LVRPFFRTIT QPRIDYLPHP SYDHRLITSA SKNPPVTIKQ
301: PLQASKDDIR QVDLKILCSN ESASVVIKTR SVTDASISVG DRHPDCDERL VTITAFEKTK DITSESQRAL VLVFSNMYEN ATAKVLDSGL TSSITARLVV
401: RSNQINCLLG EEGRIKTTIQ QRTGAFITVL NVEQNPKCVS ENNQVVQISG EFPNVREAIN QVTSMLREDL INQSFQRGSQ YAVNYSEDPF PELFSPTAGY
501: TPTFGRSSTM DPNDIFHYSS QASSRLWESP PPAAPRSVND GSGGLFSTRD DLVLTSGLKT VRYRVSEYDV CSMFGYGKDG HNRLLKSLRE VIVHIYILFT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.