Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G333800.1 | Wheat | nucleus | 93.1 | 98.95 |
| TraesCS7D01G341400.1 | Wheat | nucleus | 93.1 | 98.22 |
| HORVU7Hr1G082230.1 | Barley | nucleus | 84.93 | 96.33 |
| Os06t0342500-01 | Rice | cytosol | 77.04 | 82.63 |
| KXG20038 | Sorghum | nucleus | 77.04 | 81.89 |
| Zm00001d046033_P001 | Maize | nucleus | 75.21 | 80.06 |
| Zm00001d037055_P003 | Maize | nucleus | 74.65 | 71.62 |
| GSMUA_Achr2P15270_001 | Banana | nucleus | 57.61 | 58.85 |
| KRH64403 | Soybean | nucleus | 45.49 | 50.16 |
| KRH53532 | Soybean | nucleus | 45.63 | 50.08 |
| VIT_16s0098g01660.t01 | Wine grape | nucleus | 45.92 | 49.32 |
| AT5G53060.1 | Thale cress | nucleus | 44.79 | 48.77 |
| CDX96185 | Canola | nucleus | 43.38 | 48.05 |
| Solyc03g082980.2.1 | Tomato | nucleus | 44.79 | 47.6 |
| CDY27030 | Canola | nucleus | 44.08 | 47.07 |
| Bra022624.1-P | Field mustard | nucleus | 43.8 | 47.05 |
| PGSC0003DMT400047665 | Potato | nucleus | 44.51 | 46.06 |
| Bra003085.1-P | Field mustard | nucleus | 41.41 | 46.01 |
| CDY56908 | Canola | nucleus | 40.85 | 45.6 |
| CDY49453 | Canola | nucleus | 41.13 | 45.48 |
| TraesCS5B01G276400.1 | Wheat | plastid | 19.72 | 22.4 |
| TraesCS5B01G551800.1 | Wheat | nucleus | 19.72 | 22.19 |
| TraesCS3B01G580700.1 | Wheat | nucleus | 19.44 | 21.87 |
| TraesCS4B01G166500.2 | Wheat | nucleus | 16.76 | 21.14 |
| TraesCS3B01G189700.1 | Wheat | nucleus | 20.56 | 20.62 |
| TraesCS1B01G229900.1 | Wheat | cytosol | 12.11 | 19.15 |
| TraesCS1B01G181000.3 | Wheat | nucleus | 21.83 | 18.43 |
| TraesCS5B01G066800.1 | Wheat | nucleus | 13.24 | 18.08 |
| TraesCS4B01G069700.1 | Wheat | nucleus | 12.68 | 17.61 |
| TraesCS1B01G155000.1 | Wheat | cytosol, mitochondrion, nucleus | 10.85 | 12.85 |
| TraesCS6B01G113100.1 | Wheat | cytosol | 7.75 | 11.78 |
Protein Annotations
| Gene3D:3.30.1370.10 | Gene3D:3.30.310.210 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 |
| GO:GO:0009719 | GO:GO:0009867 | GO:GO:0009987 | GO:GO:0010286 | GO:GO:0010445 | GO:GO:0010468 |
| GO:GO:0019538 | GO:GO:0031053 | GO:GO:0040029 | GO:GO:0070878 | GO:GO:1900150 | InterPro:IPR036612 |
| InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PFAM:PF00013 | PFscan:PS50084 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF134 | SMART:SM00322 | SUPFAM:SSF54791 | EnsemblPlantsGene:TraesCS7B01G245400 | EnsemblPlants:TraesCS7B01G245400.2 | TIGR:cd00105 |
| TIGR:cd02396 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:453761339..453769676
Molecular Weight (calculated)
77112.4 Da
IEP (calculated)
5.889
GRAVY (calculated)
-0.459
Length
710 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRSRSKRGY HYDQDSPPPR SKPRFDRRGG GGGPNPNANY HRRGPPGGGG GGASDRRGGF LPPDAAPPPL PPPPPPASSA AVGGGGPGQT TSFRILCPES
101: KTYGFPASFI NNAQDDSGAI ITIHPPFPGD PVRVIETTDG VPREADGRPP MFSPAQEALL MVHRRILETQ PDDGDEDGEY GPRGKDARDR GKVTTRLIVP
201: RQHVGCLLGK GGKIIEQMRS ETKTHIRILP REQNMPQCVS LSEEVVQVVG EGNCVKKAVA IISDRLKESL HRDRGPFLRG RNSPEHRISQ ADEYLGGGQQ
301: MPAFEEPYPR FDQIRNNGSM EPPGYEFDSN GSKFNEHPEI PFDEIIFRIL CPNDKASSLV GSRDGIIDML QAEVGVDVRL TDLIAGSDER TLIITSREGP
401: DHELFPAQEA LLHIQTFIVD LGPDKDNIIT TRLLVPSSEI ACFEGRDGSL SDIQRQTSAN IQILPREELP SCALESDELI QIVGEIRAAR NALMQVTSKL
501: RSYIYREMSA PIQMGSINVH GSISPAKGSP RGLYAGNDLP MPIYQQAPQM ATSWHSKDSG LSASGSFEQG SSINDDIRQT NTKRFAVPLV TRSTLEVVIP
601: QSAVASLSMR AGSKLAQISE MSGASVTLAE DRPGVMEKVV RISGTPEQAD KAQSLLQGFI LSSESLLPLP LYEIFFFASS MRLSIHHLHS EILNACPLSA
701: CPVQDDIPSS
101: KTYGFPASFI NNAQDDSGAI ITIHPPFPGD PVRVIETTDG VPREADGRPP MFSPAQEALL MVHRRILETQ PDDGDEDGEY GPRGKDARDR GKVTTRLIVP
201: RQHVGCLLGK GGKIIEQMRS ETKTHIRILP REQNMPQCVS LSEEVVQVVG EGNCVKKAVA IISDRLKESL HRDRGPFLRG RNSPEHRISQ ADEYLGGGQQ
301: MPAFEEPYPR FDQIRNNGSM EPPGYEFDSN GSKFNEHPEI PFDEIIFRIL CPNDKASSLV GSRDGIIDML QAEVGVDVRL TDLIAGSDER TLIITSREGP
401: DHELFPAQEA LLHIQTFIVD LGPDKDNIIT TRLLVPSSEI ACFEGRDGSL SDIQRQTSAN IQILPREELP SCALESDELI QIVGEIRAAR NALMQVTSKL
501: RSYIYREMSA PIQMGSINVH GSISPAKGSP RGLYAGNDLP MPIYQQAPQM ATSWHSKDSG LSASGSFEQG SSINDDIRQT NTKRFAVPLV TRSTLEVVIP
601: QSAVASLSMR AGSKLAQISE MSGASVTLAE DRPGVMEKVV RISGTPEQAD KAQSLLQGFI LSSESLLPLP LYEIFFFASS MRLSIHHLHS EILNACPLSA
701: CPVQDDIPSS
001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP
Arabidopsis Description
RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.