Factsheet for PGSC0003DMT400041750

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g010840.1.1	Tomato	plastid	93.31	93.31
KRH39475	Soybean	plastid	33.44	33.55
PGSC0003DMT400083772	Potato	plastid	35.07	33.44
PGSC0003DMT400087680	Potato	plastid	13.21	32.53
KRH74462	Soybean	nucleus	30.34	30.19
CDY13742	Canola	mitochondrion	28.22	27.64
CDX89490	Canola	cytosol	27.73	27.46
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	27.9	27.1
Bra030226.1-P	Field mustard	plastid	27.41	27.1
Bra038508.1-P	Field mustard	cytosol, plastid	28.22	27.07
CDY25609	Canola	cytosol	27.41	27.05
AT2G22600.1	Thale cress	mitochondrion	27.73	26.9
PGSC0003DMT400047374	Potato	nucleus	22.51	25.89
PGSC0003DMT400074198	Potato	plastid	18.43	25.45
PGSC0003DMT400064701	Potato	nucleus	22.84	25.23
PGSC0003DMT400003371	Potato	nucleus	22.02	24.95
PGSC0003DMT400012623	Potato	nucleus, plastid	27.41	24.89
PGSC0003DMT400038635	Potato	cytosol	5.71	23.97
OQU88922	Sorghum	nucleus, peroxisome, plastid	25.12	23.91
PGSC0003DMT400076798	Potato	nucleus	23.33	23.06
Zm00001d019538_P002	Maize	plastid	24.63	22.37
PGSC0003DMT400047665	Potato	nucleus	24.47	21.87
Os07t0439100-01	Rice	cytosol	6.85	18.03
PGSC0003DMT400076105	Potato	plastid	12.89	17.1
PGSC0003DMT400046406	Potato	cytosol	15.66	16.27
PGSC0003DMT400066836	Potato	nucleus, plastid	11.42	15.73
PGSC0003DMT400051668	Potato	cytosol	12.4	14.84
PGSC0003DMT400051262	Potato	nucleus	12.07	14.74

Protein Annotations

EntrezGene:102598855	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
UniProt:M1BBW9	PFAM:PF00013	EnsemblPlantsGene:PGSC0003DMG400016189	PGSC:PGSC0003DMG400016189	EnsemblPlants:PGSC0003DMT400041750	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF173	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002961F8C	RefSeq:XP_006353154.1
SEG:seg	:	:	:	:	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016189]

Coordinates

chr11:-:2120275..2126819

Molecular Weight (calculated)

65965.3 Da

IEP (calculated)

8.675

GRAVY (calculated)

-0.217

Length

613 amino acids

Sequence
(BLAST)

001: MNNQNHFRPP IKRFGSGSGS GGDPTAVLQP GQVHFRLLCH VSTAGGVIGN SGGLIRQLEA QTGCRIRFEE PLPNCHERVV NIIGDSIIDR KIRISYDGSS
101: EEVEVVEVSR AQEGLIRVYE RVLQLEGNGG AVGCRLLAIS GQIGALMGKG GVIVDGIRKS TGAKIKVLTK EQLPACAIPG EELIQIMGVI AVVKRALVHV
201: SRRLQVRLPA ERYKDQVTSK GASHEQPADY PLDTKSSIQP LPRNAVNHSS VAHSLSSDVD RVLNLDADSA QRKVVFRLLC SYISAGGVIG KGAHIVKALE
301: KDTGASIKFS TPTVRSKERV AIISSLEIRK PLYSPAQVAT DRVFERSVEV SREHGHIKAG SISARILVGP HEVKCLLDEK GIVSLDIGSA MGVEVQLLDA
401: ENAPNCAAEN DKIVQIIGEH DNVRNALIQL TGRLREMVFS SLVSEGAVPT NYSCSSRSES SKHEFGTSMP SLPNHLSSFS SLYQTDHLGF GPNLGGPHTL
501: LQDKFKDRLN SKMGKPVKQS MGGWKSSHGG RESGRMDENE TASKPVVINV PKQKFGSVYG EDGSNLTRLK EISGATVILQ DPGPGECDGK VIISGTPEQI
601: QMAQSLLQAF IFL

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.