Factsheet for PGSC0003DMT400058356

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g067540.1.1	Tomato	nucleus	83.28	88.47
KRH50906	Soybean	nucleus	41.64	41.04
KRH02219	Soybean	nucleus	42.23	40.68
KRH75649	Soybean	nucleus	29.91	36.82
PGSC0003DMT400056527	Potato	nucleus	16.42	35.0
CDY02618	Canola	nucleus	32.84	33.73
GSMUA_Achr8P30180_001	Banana	nucleus	30.5	33.33
Bra006466.1-P	Field mustard	nucleus, plastid	30.21	33.23
CDY58106	Canola	nucleus	32.26	33.13
CDX88931	Canola	nucleus	31.96	33.13
Bra023684.1-P	Field mustard	nucleus, plastid	30.21	32.91
TraesCS2A01G116900.1	Wheat	nucleus	28.74	32.78
CDX70826	Canola	nucleus	31.38	32.33
Bra002168.1-P	Field mustard	nucleus, plastid	29.91	32.18
TraesCS2B01G136100.1	Wheat	nucleus	28.74	31.92
AT5G18560.1	Thale cress	nucleus	32.55	31.9
TraesCS2D01G118200.1	Wheat	nucleus, plastid	27.57	31.86
CDY13901	Canola	nucleus	31.38	31.85
CDY68296	Canola	nucleus	29.91	31.58
Zm00001d007119_P001	Maize	nucleus	27.27	31.42
Os07t0669500-01	Rice	nucleus, plastid	28.15	30.19
Zm00001d022488_P001	Maize	nucleus	27.57	29.84
PGSC0003DMT400076408	Potato	nucleus	13.2	29.41
PGSC0003DMT400005596	Potato	nucleus, plastid	16.42	28.57
KXG36907	Sorghum	nucleus	27.27	28.44
PGSC0003DMT400011492	Potato	nucleus	19.06	25.59
PGSC0003DMT400008830	Potato	nucleus	19.06	25.59
PGSC0003DMT400036071	Potato	nucleus	14.08	25.26
PGSC0003DMT400001820	Potato	nucleus	14.37	25.26
PGSC0003DMT400068959	Potato	nucleus	15.84	24.11
PGSC0003DMT400005585	Potato	nucleus, plastid	18.77	22.07
PGSC0003DMT400037359	Potato	mitochondrion, nucleus	14.37	21.97
PGSC0003DMT400058751	Potato	nucleus	14.37	21.68
PGSC0003DMT400033391	Potato	nucleus	14.08	20.87
PGSC0003DMT400057443	Potato	nucleus	14.66	20.83
PGSC0003DMT400035731	Potato	nucleus	15.54	17.85
PGSC0003DMT400047887	Potato	nucleus	19.94	17.44

Protein Annotations

EntrezGene:102593425	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1C2J3	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400022667	PGSC:PGSC0003DMG400022667	EnsemblPlants:PGSC0003DMT400058356	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000296C80E
RefSeq:XP_006342833.1	SEG:seg	:	:	:	:

Description

AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400022667]

Coordinates

chr1:+:58981456..58982481

Molecular Weight (calculated)

38544.4 Da

IEP (calculated)

5.182

GRAVY (calculated)

-0.852

Length

341 amino acids

Sequence
(BLAST)

001: MSSSSNNNST PAISSDNQLP FGMFEPIRTP TGYSWLQRNT AICQPSEKRG RRKQTEPGRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAQEAALAYD
101: RAALSMKGTQ ARTNFIYTSD SANTNFPSLI SPFEHVQNML NPNTHFNFNT PMSNNNVIKN TKTKIITTTT TANSDESSSY GSSPNENNNF VFLSDHDNMN
201: NTNSGYLLDC IVPDSCLKPP PQQQPSSTPQ SKMIIKNREE ENNDHQNTFY GTNGFFDEEK YMSSWESTCE LSAMTMMNNS NMNQMMDDVA AGSYYYPNME
301: INNAANFDHK NDQLMMMPNH ETTNAAATTF GDVEFGYTTL F

Best Arabidopsis Sequence Match ( AT5G18560.1 )
(BLAST)

001: MSTSKTLDHN KPFETSQTQM GFALIHQNTS ANTTTTTTTG ERRGRRSKQA EPGRFLGVRR RPWGRYAAEI RDPTTKERHW LGTFDTAHEA ALAYDRAALS
101: MRGTQARTNF VYTPTDVHTI LTNPNLHSLI VSPYNNNQSF LPNSSPQFVI DHHPHYQNYH QPQQPKHTLP QTVLPAASFK TPVRHQSVDI QAFGNSPQNS
201: SSNGSLSSSL DEENNFFFSL TSEEHNKSNN NSGYLDCIVP NHCLKPPPEA TTTQNQAGAS FTTPVASKAS EPYGGFSNSY FEDGEMMMMN HHEFGSCDLS
301: AMITNYGAAA ASMSMEDYGM MEPQDLSSSS IAAFGDVVAD TTGFYSVF

Arabidopsis Description

ERF086PUCHI [Source:UniProtKB/TrEMBL;Acc:A0A178URC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.