Factsheet for TraesCS2A01G116900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G136100.1	Wheat	nucleus	94.31	91.86
TraesCS2D01G118200.1	Wheat	nucleus, plastid	89.97	91.19
Zm00001d007119_P001	Maize	nucleus	68.23	68.92
Zm00001d022488_P001	Maize	nucleus	71.57	67.94
Os07t0669500-01	Rice	nucleus, plastid	71.57	67.3
KXG36907	Sorghum	nucleus	71.24	65.14
GSMUA_Achr8P30180_001	Banana	nucleus	33.78	32.37
Solyc01g067540.1.1	Tomato	nucleus	32.78	30.53
Bra023684.1-P	Field mustard	nucleus, plastid	31.77	30.35
CDY02618	Canola	nucleus	33.44	30.12
CDY58106	Canola	nucleus	33.11	29.82
CDY68296	Canola	nucleus	32.11	29.72
Bra002168.1-P	Field mustard	nucleus, plastid	31.44	29.65
Bra006466.1-P	Field mustard	nucleus, plastid	30.43	29.35
CDY13901	Canola	nucleus	32.78	29.17
PGSC0003DMT400058356	Potato	nucleus	32.78	28.74
CDX88931	Canola	nucleus	31.44	28.57
TraesCS3A01G328100.1	Wheat	nucleus	16.39	28.32
TraesCS2A01G288700.1	Wheat	plastid	24.75	28.24
AT5G18560.1	Thale cress	nucleus	32.78	28.16
CDX70826	Canola	nucleus	31.1	28.1
KRH11206	Soybean	nucleus	29.1	27.88
TraesCS1A01G314200.1	Wheat	nucleus	17.39	27.66
KRH21045	Soybean	nucleus	29.1	27.02
TraesCS2A01G427700.1	Wheat	nucleus	18.73	26.67
KRH50906	Soybean	nucleus	30.77	26.59
KRH02219	Soybean	nucleus	30.77	25.99
KRH75649	Soybean	nucleus	23.41	25.27
TraesCS6A01G131200.1	Wheat	nucleus	17.06	25.25
TraesCS7A01G436400.1	Wheat	nucleus	16.39	25.13
TraesCS2A01G542700.1	Wheat	nucleus	14.72	22.8
TraesCS1A01G314300.1	Wheat	nucleus	17.73	22.46
TraesCS6A01G171900.1	Wheat	nucleus	15.38	22.22
TraesCS3A01G328000.1	Wheat	nucleus	17.73	21.46
TraesCS6A01G208700.1	Wheat	nucleus	15.38	15.38
CDY46294	Canola	nucleus	4.35	9.03
Bra032881.1-P	Field mustard	nucleus	4.01	8.33

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010582	GO:GO:0045893	GO:GO:2000032
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677
PANTHER:PTHR31677:SF40	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS2A01G116900	EnsemblPlants:TraesCS2A01G116900.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:66848770..66849669

Molecular Weight (calculated)

31696.3 Da

IEP (calculated)

7.118

GRAVY (calculated)

-0.672

Length

299 amino acids

Sequence
(BLAST)

001: MSSRSSSGGG GASQMMAFSE HSLPKPIAGH PQPQPSPPSS PSERPAARGR RRAQEPGRFL GVRRRPWGRY AAEIRDPTTK ERHWLGTFDT AQEAALAYDR
101: AALSMKGAQA RTNFVYAHAA YNNYPPFLAP FHAQHQPAAY AASSAMPYGG QQQHAGAGPP HIGSSYHHGH GYHQQGPGEC SMPVPSAADH GASGPMDVRG
201: SSGHDFLFPS ADDNSGYLSS VVPESCLRPR GGDLQDARRY SVSDADAYGL GLREDVDDLA TMVAGFWGGA DAPYGGGHDM VASSQGSDNG YSPFSFLSH

Best Arabidopsis Sequence Match ( AT5G18560.1 )
(BLAST)

001: MSTSKTLDHN KPFETSQTQM GFALIHQNTS ANTTTTTTTG ERRGRRSKQA EPGRFLGVRR RPWGRYAAEI RDPTTKERHW LGTFDTAHEA ALAYDRAALS
101: MRGTQARTNF VYTPTDVHTI LTNPNLHSLI VSPYNNNQSF LPNSSPQFVI DHHPHYQNYH QPQQPKHTLP QTVLPAASFK TPVRHQSVDI QAFGNSPQNS
201: SSNGSLSSSL DEENNFFFSL TSEEHNKSNN NSGYLDCIVP NHCLKPPPEA TTTQNQAGAS FTTPVASKAS EPYGGFSNSY FEDGEMMMMN HHEFGSCDLS
301: AMITNYGAAA ASMSMEDYGM MEPQDLSSSS IAAFGDVVAD TTGFYSVF

Arabidopsis Description

ERF086PUCHI [Source:UniProtKB/TrEMBL;Acc:A0A178URC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.