Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400030829 | |
| PGSC0003DMT400054421 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G24590.1 | PGSC0003DMT400030829 | AT1G30490.1 | 17376809 |
| AT1G24590.1 | PGSC0003DMT400054421 | AT1G30490.1 | 17376809 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400008830 | Potato | nucleus | 100.0 | 100.0 |
| PGSC0003DMT400076408 | Potato | nucleus | 20.87 | 34.64 |
| PGSC0003DMT400056527 | Potato | nucleus | 21.26 | 33.75 |
| PGSC0003DMT400047887 | Potato | nucleus | 44.88 | 29.23 |
| PGSC0003DMT400036071 | Potato | nucleus | 21.65 | 28.95 |
| PGSC0003DMT400001820 | Potato | nucleus | 22.05 | 28.87 |
| Bra012499.1-P | Field mustard | nucleus | 33.07 | 28.47 |
| CDY51586 | Canola | nucleus | 33.07 | 28.47 |
| CDY24422 | Canola | nucleus | 33.46 | 28.43 |
| HORVU6Hr1G053460.1 | Barley | nucleus | 19.68 | 28.25 |
| GSMUA_Achr9P01870_001 | Banana | nucleus | 31.89 | 28.12 |
| AT1G24590.1 | Thale cress | nucleus | 33.86 | 28.1 |
| CDY03876 | Canola | nucleus | 33.07 | 28.09 |
| CDY36131 | Canola | nucleus | 33.07 | 28.09 |
| Bra010972.1-P | Field mustard | nucleus | 33.07 | 27.91 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.71 | 27.86 |
| PGSC0003DMT400005596 | Potato | nucleus, plastid | 20.87 | 27.04 |
| KRH74517 | Soybean | nucleus | 38.58 | 27.0 |
| VIT_00s0291g00030.t01 | Wine grape | nucleus | 43.7 | 26.81 |
| KRG99434 | Soybean | nucleus | 36.61 | 26.27 |
| KRH45585 | Soybean | nucleus | 36.22 | 25.99 |
| PGSC0003DMT400068959 | Potato | nucleus | 22.44 | 25.45 |
| PGSC0003DMT400058751 | Potato | nucleus | 22.05 | 24.78 |
| PGSC0003DMT400033391 | Potato | nucleus | 22.05 | 24.35 |
| KRH69639 | Soybean | nucleus | 37.4 | 24.3 |
| GSMUA_Achr3P19420_001 | Banana | nucleus | 27.17 | 24.3 |
| PGSC0003DMT400037359 | Potato | mitochondrion, nucleus | 21.26 | 24.22 |
| PGSC0003DMT400057443 | Potato | nucleus | 20.87 | 22.08 |
| PGSC0003DMT400005585 | Potato | nucleus, plastid | 24.02 | 21.03 |
| PGSC0003DMT400035731 | Potato | nucleus | 22.44 | 19.19 |
| PGSC0003DMT400058356 | Potato | nucleus | 25.59 | 19.06 |
| Zm00001d050948_P001 | Maize | nucleus | 22.05 | 19.05 |
| EES05354 | Sorghum | nucleus | 22.44 | 18.39 |
| TraesCS6B01G237700.1 | Wheat | nucleus | 20.87 | 17.79 |
| TraesCS6D01G192200.1 | Wheat | nucleus | 20.87 | 17.79 |
| TraesCS6A01G208700.1 | Wheat | nucleus | 20.87 | 17.73 |
| Os02t0594300-00 | Rice | nucleus | 21.65 | 15.94 |
Protein Annotations
| EntrezGene:102581975 | EntrezGene:107061965 | MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 |
| InterPro:IPR036955 | UniProt:M0ZZM7 | PFAM:PF00847 | EnsemblPlantsGene:PGSC0003DMG400004515 | PGSC:PGSC0003DMG400004515 | EnsemblPlants:PGSC0003DMT400011492 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | PANTHER:PTHR31677:SF9 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI000295A37B | RefSeq:XP_006349659.1 | RefSeq:XP_015167529.1 | SEG:seg | : | : |
Description
AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400004515]
Coordinates
chr4:-:38571082..38572050
Molecular Weight (calculated)
28586.8 Da
IEP (calculated)
7.500
GRAVY (calculated)
-0.523
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDAMKPVQT RIFKRSVKLG RGGGGSMRYR GVRRRPWGRY AAEIRDPQTK ERKWLGTFDT AEEAACAYDC AARSMRGVKA RTNFLYPPLT HDFLNVYTCT
101: KTHNQFSLES SLPKSSNMFV FHEIDVNISS KSSNINNLNN NPCDEQLLPL TGYHEISTTV DSGMEYFFPI LPCDNSGFLE QALNGFFPKP LQENKSNVGH
201: DIKLSNCPED LLNSTSESSS EPIHQQISGP MTFHYSDLLN ILAANMKNSS TILL
101: KTHNQFSLES SLPKSSNMFV FHEIDVNISS KSSNINNLNN NPCDEQLLPL TGYHEISTTV DSGMEYFFPI LPCDNSGFLE QALNGFFPKP LQENKSNVGH
201: DIKLSNCPED LLNSTSESSS EPIHQQISGP MTFHYSDLLN ILAANMKNSS TILL
001: MEEAIMRLEG AEHRETNIHS LKRKPSRTSS TAPGSPGGVT TAKAASGAGA SGVSTIRYRG VRRRPWGRYA AEIRDPLSKE RRWLGTFDTA EEAACAYDCA
101: ARAMRGLKAR TNFVYPMPSL DSYHHRIFSS PPMNMFLLRD VLNSQSLSPL TTFAYPPCNL SNVNDVVHES FTNVNDVCED LSPKAKRSST IENESLISNI
201: FEPEPASSGL LQEIVQGFLP KPISQHASIP PKSNQQSVGV FPTMPESGFQ TDVRLADFHV EGNGFGQVKY HGELGWADHE NGFDSAKMQQ NGNGGMFYQY
301: CFHDDY
101: ARAMRGLKAR TNFVYPMPSL DSYHHRIFSS PPMNMFLLRD VLNSQSLSPL TTFAYPPCNL SNVNDVVHES FTNVNDVCED LSPKAKRSST IENESLISNI
201: FEPEPASSGL LQEIVQGFLP KPISQHASIP PKSNQQSVGV FPTMPESGFQ TDVRLADFHV EGNGFGQVKY HGELGWADHE NGFDSAKMQQ NGNGGMFYQY
301: CFHDDY
Arabidopsis Description
ESR2Ethylene-responsive transcription factor ESR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.