Factsheet for TraesCS5B01G368400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G128600.1
TraesCS1A01G176500.1
TraesCS1A01G314200.1
TraesCS1B01G146600.1
TraesCS1B01G203600.1
TraesCS1B01G326500.1
TraesCS1D01G124800.1
TraesCS1D01G162500.1
TraesCS1D01G314700.1
TraesCS2A01G255800.1
TraesCS2D01G266900.1
TraesCS3A01G328100.1
TraesCS3B01G357600.1
TraesCS3D01G321700.1
TraesCS4A01G355900.1
TraesCS5A01G022300.1
TraesCS5A01G309300.1
TraesCS5B01G310000.1
TraesCS5B01G516200.1
TraesCS5D01G316300.1
TraesCS5D01G516300.1
TraesCS7A01G422700.1
TraesCS7B01G323100.1
TraesCS7D01G415100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	TraesCS1A01G314200.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS1B01G326500.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS1D01G314700.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3A01G328100.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3B01G357600.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3D01G321700.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS2A01G255800.1	AT2G39760.1	21798944
AT4G36690.1	TraesCS2D01G266900.1	AT2G39760.1	21798944
AT4G36690.1	TraesCS1A01G128600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1A01G176500.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1B01G146600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1B01G203600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1D01G124800.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1D01G162500.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS5A01G022300.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7A01G422700.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7B01G323100.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7D01G415100.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS4A01G355900.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5A01G309300.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5B01G310000.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5B01G516200.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5D01G316300.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5D01G516300.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G090000.2	Barley	nucleus	56.67	89.92
TraesCS5D01G375600.1	Wheat	nucleus	72.06	74.3
CDY12868	Canola	mitochondrion	26.83	74.12
TraesCS5A01G366000.1	Wheat	nucleus	71.11	73.93
PGSC0003DMT400040069	Potato	cytosol	35.71	72.35
CDY67096	Canola	mitochondrion	28.1	71.66
HORVU5Hr1G089980.2	Barley	nucleus, plastid	60.63	67.14
CDX75589	Canola	mitochondrion	37.46	66.48
Bra040973.1-P	Field mustard	nucleus	27.94	64.71
AT1G60830.2	Thale cress	nucleus	11.27	63.96
GSMUA_Achr4P16510_001	Banana	nucleus	47.46	63.35
TraesCS4B01G145600.4	Wheat	nucleus	56.51	62.57
CDY55407	Canola	nucleus	11.11	62.5
Zm00001d048777_P007	Maize	nucleus	55.71	58.7
Bra027119.1-P	Field mustard	nucleus	45.4	58.25
CDY40481	Canola	nucleus	46.98	57.36
VIT_13s0139g00410.t01	Wine grape	cytosol	6.19	57.35
KXG28995	Sorghum	nucleus	54.44	57.17
CDY12869	Canola	nucleus	44.92	57.06
VIT_04s0023g01450.t01	Wine grape	nucleus	50.32	56.11
CDY40492	Canola	nucleus	13.33	56.0
PGSC0003DMT400033041	Potato	nucleus	48.41	54.86
Solyc02g085570.2.1	Tomato	nucleus	48.57	54.84
CDY24773	Canola	nucleus	47.94	54.51
Bra010569.1-P	Field mustard	nucleus	47.94	54.51
AT1G60900.1	Thale cress	nucleus	50.95	54.5
CDY35472	Canola	nucleus	47.46	54.36
GSMUA_Achr4P11020_001	Banana	nucleus	49.68	54.34
AT4G36690.1	Thale cress	nucleus	49.05	53.93
Solyc02g062920.2.1	Tomato	nucleus	47.62	53.57
Zm00001d007632_P003	Maize	nucleus	53.33	53.42
KRH56450	Soybean	nucleus	51.11	53.22
KRH64800	Soybean	nucleus	50.63	53.17
CDY40493	Canola	nucleus	23.49	52.67
CDY03767	Canola	nucleus	50.16	52.06
Bra031477.1-P	Field mustard	nucleus	49.05	52.02
CDY46188	Canola	nucleus	49.05	52.02
Bra040940.1-P	Field mustard	nucleus	46.03	51.6
CDY66742	Canola	nucleus	46.03	51.15
PGSC0003DMT400000919	Potato	nucleus	48.1	50.08
Solyc12g008750.1.1	Tomato	nucleus	47.62	49.42
CDY30313	Canola	nucleus	45.4	48.64
CDY55589	Canola	mitochondrion	19.05	47.81
Bra031341.1-P	Field mustard	nucleus	18.73	47.01
Bra010656.1-P	Field mustard	mitochondrion, plastid	18.73	46.64
TraesCS2B01G144600.1	Wheat	nucleus	10.95	42.33
TraesCS5B01G041900.1	Wheat	nucleus	10.63	40.36
TraesCS5B01G067400.1	Wheat	nucleus	9.21	31.02
VIT_13s0139g00390.t01	Wine grape	plasma membrane	7.62	30.77

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	EnsemblPlantsGene:TraesCS5B01G368400	EnsemblPlants:TraesCS5B01G368400.1	InterPro:U2AF_lg
TIGR:cd12230	TIGR:cd12231	TIGR:cd12232	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:-:546808785..546813196

Molecular Weight (calculated)

71994.4 Da

IEP (calculated)

7.939

GRAVY (calculated)

-1.194

Length

630 amino acids

Sequence
(BLAST)

001: MAEHDAPPES GAARSPPAKR GGDARSPQRD AQPHQERSSS SRDRVRERDE DKDRERDEHK DRERHRRRGE DRERYRDREI VRDRGEGSRD RERHHREHRD
101: GSRDRERHHR EHRDGIRDRE RHHREHSEGS RDRERHHREH REGSRDRERH HREHRDGSRD RECHHREHRD GSRDRERHHR EHRERSERRE QRDRSDDRDN
201: RRSGDRDAER RDRDRDGHRR HRSRSRSESQ SKRMSGFDQG PSGAIPILAP TATPVQLPEL PAANPGMFPN MLPNLVNVPA LGQPLAMTQQ ATRHARRVYV
301: GGLPPIANEQ TVSVFFNQVM AAIGGNTFGL GHAVVNVYIN HDKKFAFVEM RSVEEASNAM ALDGIMFEGV AVKVRRPTDY NPSQAAALGP SQPNPNLNLT
401: AVGLTPGAGG GIEGPDRIFV GGLPYYFTEA QVRELLETFG PLRGFDIVKD KETGNSKGYA FCLYQDVTVT DIACAALNGI QLGDRTLTVR RANQGAEPRP
501: EQDHILLQAQ QEAQMKRLVY EVGGALATKV VCLTQVVSAD DLRDDEEYND ILEDMTLEAR KYGNLVQAVI PRPHPSGDPV AGVGKVFLEY ADMESSAKAR
601: IGMHGRKFDG KETVTVFYPE NKFAEGDYDY

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.