Factsheet for Bra027119.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040973.1-P	Field mustard	nucleus	50.31	90.81
AT1G60830.2	Thale cress	nucleus	18.53	81.98
CDY12869	Canola	nucleus	82.48	81.65
PGSC0003DMT400040069	Potato	cytosol	49.49	78.14
HORVU5Hr1G090000.2	Barley	nucleus	54.79	67.76
GSMUA_Achr4P16510_001	Banana	nucleus	63.34	65.89
Bra031477.1-P	Field mustard	nucleus	75.97	62.79
AT1G60900.1	Thale cress	nucleus	74.54	62.14
VIT_13s0139g00410.t01	Wine grape	cytosol	8.55	61.76
Bra031341.1-P	Field mustard	nucleus	31.57	61.75
Bra010656.1-P	Field mustard	mitochondrion, plastid	30.96	60.08
PGSC0003DMT400033041	Potato	nucleus	64.97	57.37
Solyc02g085570.2.1	Tomato	nucleus	64.56	56.81
Solyc02g062920.2.1	Tomato	nucleus	64.56	56.61
GSMUA_Achr4P11020_001	Banana	nucleus	65.78	56.08
Bra010569.1-P	Field mustard	nucleus	62.73	55.6
EES08974	Sorghum	nucleus	61.51	55.41
TraesCS4D01G143400.3	Wheat	nucleus	61.71	55.19
HORVU4Hr1G029030.3	Barley	nucleus	61.1	54.55
TraesCS4B01G145600.4	Wheat	nucleus	61.71	53.25
KRH56450	Soybean	nucleus	65.58	53.22
KRH64800	Soybean	nucleus	64.97	53.17
TraesCS4D01G150000.4	Wheat	nucleus	61.71	52.88
PGSC0003DMT400000919	Potato	nucleus	64.97	52.73
Bra040940.1-P	Field mustard	nucleus	59.88	52.31
TraesCS4A01G165000.4	Wheat	nucleus	62.12	52.14
Os11t0636900-02	Rice	nucleus	60.9	52.09
Solyc12g008750.1.1	Tomato	nucleus	64.15	51.89
TraesCSU01G068100.3	Wheat	nucleus	61.1	51.72
TraesCS4A01G171800.3	Wheat	nucleus	61.1	51.64
HORVU5Hr1G089980.2	Barley	nucleus, plastid	57.43	49.56
KXG28995	Sorghum	nucleus	60.08	49.17
HORVU4Hr1G038850.14	Barley	nucleus	60.29	48.93
TraesCS5A01G366000.1	Wheat	nucleus	60.29	48.84
TraesCS5D01G375600.1	Wheat	nucleus	58.66	47.14
TraesCS5B01G368400.1	Wheat	nucleus	58.25	45.4
KXG29128	Sorghum	nucleus	52.14	40.44
TraesCS2A01G122400.1	Wheat	nucleus	12.83	38.65
TraesCS2B01G144600.1	Wheat	nucleus	12.42	37.42
TraesCS5B01G041900.1	Wheat	nucleus	12.63	37.35
VIT_13s0139g00390.t01	Wine grape	plasma membrane	11.81	37.18
TraesCS5A01G040700.1	Wheat	cytosol	12.42	36.75
TraesCS5D01G071700.1	Wheat	nucleus	11.41	32.56
TraesCS5B01G067400.1	Wheat	nucleus	11.0	28.88
TraesCS5D01G071600.1	Wheat	nucleus	11.0	28.88
Zm00001d007635_P004	Maize	nucleus	23.83	16.62
Bra022941.1-P	Field mustard	nucleus	18.33	7.14

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra027119	EnsemblPlants:Bra027119.1	EnsemblPlants:Bra027119.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4EEA7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI0002542664	SEG:seg	:

Description

AT1G60900 (E=1e-192) | U2 snRNP auxiliary factor large subunit, putative

Coordinates

chrA09:-:8593987..8597377

Molecular Weight (calculated)

53272.0 Da

IEP (calculated)

6.437

GRAVY (calculated)

-0.477

Length

491 amino acids

Sequence
(BLAST)

001: MSSYEANGGE NKNENYVALE SSPFNSLGGE DSKSRQDVEK ESSRSRDRGR NSRDRDGKVD RHRRDRHSRE RSERDDHHHT RSQSKRVSGF DMPPPSSAML
101: APTTVAAAGQ VPSVPATPNI PGMFPNVLAM VPNQQLGALP LLPFQAMTQQ ATRHARRVYV GGLPPTANEQ SIATFFSQVM SAVGGNTAGP GDAVVNVYIN
201: HEKKFAFVEM RSVEEASNAM ALDGIILEGV PVKVKRPTDY NPSLAAALGP SQPNPNLNLA AVGVSSGSTG GLEGPDRLFV GGIPYYLTED QIRELLESFG
301: PLKGFNLVKD RETGNSMGYA FCVFQDPSVT DIACAALNGI KMGNKTLTVR RAVQGAIQPK PEQEDILLHA QQQIALQRLM LQPGGTPTKI VCLTQVVTAN
401: VLGDDKEYED IMEDMRLEGG KFGNLVNVVI PRPSPDHDPT PGVGKVFLEY ADLDSAAKAR SRMNGRKFDG IQVVAVYYPE NKYAQGDYEA C

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.