Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- nucleus 4
- plastid 2
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55407 | Canola | nucleus | 86.49 | 85.71 |
| CDY40492 | Canola | nucleus | 80.18 | 59.33 |
| Bra040973.1-P | Field mustard | nucleus | 82.88 | 33.82 |
| TraesCS5B01G041900.1 | Wheat | nucleus | 44.14 | 29.52 |
| TraesCS5A01G040700.1 | Wheat | cytosol | 42.34 | 28.31 |
| TraesCS2A01G122400.1 | Wheat | nucleus | 41.44 | 28.22 |
| TraesCS2B01G144600.1 | Wheat | nucleus | 40.54 | 27.61 |
| TraesCS5D01G071700.1 | Wheat | nucleus | 42.34 | 27.33 |
| TraesCS5D01G071600.1 | Wheat | nucleus | 44.14 | 26.2 |
| TraesCS5B01G067400.1 | Wheat | nucleus | 43.24 | 25.67 |
| PGSC0003DMT400040069 | Potato | cytosol | 63.96 | 22.83 |
| CDY12869 | Canola | nucleus | 82.88 | 18.55 |
| Bra027119.1-P | Field mustard | nucleus | 81.98 | 18.53 |
| CDY40481 | Canola | nucleus | 84.68 | 18.22 |
| HORVU5Hr1G090000.2 | Barley | nucleus | 64.86 | 18.14 |
| AT1G60900.1 | Thale cress | nucleus | 94.59 | 17.83 |
| CDY46188 | Canola | nucleus | 89.19 | 16.67 |
| Bra031477.1-P | Field mustard | nucleus | 89.19 | 16.67 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 70.27 | 16.53 |
| CDY03767 | Canola | nucleus | 88.29 | 16.14 |
| TraesCS4D01G143400.3 | Wheat | nucleus | 69.37 | 14.03 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 72.07 | 13.89 |
| TraesCS4B01G145600.4 | Wheat | nucleus | 71.17 | 13.88 |
| HORVU4Hr1G029030.3 | Barley | nucleus | 68.47 | 13.82 |
| TraesCS4D01G150000.4 | Wheat | nucleus | 71.17 | 13.79 |
| AT4G36690.1 | Thale cress | nucleus | 71.17 | 13.79 |
| PGSC0003DMT400033041 | Potato | nucleus | 68.47 | 13.67 |
| TraesCS4A01G165000.4 | Wheat | nucleus | 71.17 | 13.5 |
| Solyc02g085570.2.1 | Tomato | nucleus | 67.57 | 13.44 |
| TraesCSU01G068100.3 | Wheat | nucleus | 69.37 | 13.28 |
| TraesCS4A01G171800.3 | Wheat | nucleus | 69.37 | 13.25 |
| EES08974 | Sorghum | nucleus | 64.86 | 13.21 |
| HORVU5Hr1G089980.2 | Barley | nucleus, plastid | 64.86 | 12.65 |
| PGSC0003DMT400000919 | Potato | nucleus | 68.47 | 12.56 |
| KXG28995 | Sorghum | nucleus | 67.57 | 12.5 |
| Solyc02g062920.2.1 | Tomato | nucleus | 63.06 | 12.5 |
| TraesCS5A01G366000.1 | Wheat | nucleus | 67.57 | 12.38 |
| Os11t0636900-02 | Rice | nucleus | 63.96 | 12.37 |
| Solyc12g008750.1.1 | Tomato | nucleus | 66.67 | 12.19 |
| HORVU4Hr1G038850.14 | Barley | nucleus | 65.77 | 12.07 |
| TraesCS5D01G375600.1 | Wheat | nucleus | 65.77 | 11.95 |
| KRH56450 | Soybean | nucleus | 64.86 | 11.9 |
| KRH64800 | Soybean | nucleus | 63.96 | 11.83 |
| TraesCS5B01G368400.1 | Wheat | nucleus | 63.96 | 11.27 |
| KXG29128 | Sorghum | nucleus | 54.05 | 9.48 |
| VIT_13s0139g00390.t01 | Wine grape | plasma membrane | 10.81 | 7.69 |
| VIT_13s0139g00410.t01 | Wine grape | cytosol | 4.5 | 7.35 |
| CDY55589 | Canola | mitochondrion | 8.11 | 3.59 |
| Bra031341.1-P | Field mustard | nucleus | 8.11 | 3.59 |
| Bra010656.1-P | Field mustard | mitochondrion, plastid | 7.21 | 3.16 |
| CDY12868 | Canola | mitochondrion | 4.5 | 2.19 |
| AT2G33435.1 | Thale cress | nucleus | 22.52 | 1.89 |
| Zm00001d007635_P004 | Maize | nucleus | 11.71 | 1.85 |
| CDY40493 | Canola | nucleus | 1.8 | 0.71 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:842376 | ProteinID:AAG51869.1 | ProteinID:AEE33737.1 | ProteinID:ANM58239.1 |
| ArrayExpress:AT1G60830 | EnsemblPlantsGene:AT1G60830 | RefSeq:AT1G60830 | TAIR:AT1G60830 | RefSeq:AT1G60830-TAIR-G | EnsemblPlants:AT1G60830.2 |
| Unigene:At.52293 | GO:GO:0000243 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0008187 |
| GO:GO:0016607 | GO:GO:0030628 | GO:GO:0071004 | GO:GO:0089701 | InterPro:IPR000504 | InterPro:IPR012677 |
| RefSeq:NP_001320689.1 | RefSeq:NP_564764.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 |
| PANTHER:PTHR23139:SF80 | UniProt:Q9C6C1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SUPFAM:SSF54928 | UniParc:UPI00000A2BE6 |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9C6C1]
Coordinates
chr1:-:22395003..22396133
Molecular Weight (calculated)
12045.0 Da
IEP (calculated)
4.124
GRAVY (calculated)
-0.582
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQPGGTPTK IVCLTQVVTA DDLRDDAEYA DIMEDMSQEG GKFGNLVNVV IPRPNPDHDP TPGVGKVFLE YADVDGSSKA RSGMNGRKFG GNQVVAVYYP
101: EDKYAQGDYE D
101: EDKYAQGDYE D
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.