CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91429
KRG97837
KRH02335
KRH10926
KRH21385
KRH28659
KRH31032
KRH35393
KRH50753
KRH69931
KRH76798

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	KRH10926	AT1G28360.1	21798944
AT4G36690.1	KRH21385	AT1G28360.1	21798944
AT4G36690.1	KRG97837	AT2G39760.1	21798944
AT4G36690.1	KRH31032	AT2G39760.1	21798944
AT4G36690.1	KRH28659	AT3G50670.1	21798944
AT4G36690.1	KRH69931	AT3G50670.1	21798944
AT4G36690.1	KRH76798	AT3G50670.1	21798944
AT4G36690.1	KRH02335	AT5G49400.1	21798944
AT4G36690.1	KRH50753	AT5G49400.1	21798944
AT4G36690.1	KRG91429	AT5G51910.1	21798944
AT4G36690.1	KRH35393	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56450	Soybean	nucleus	91.0	90.25
PGSC0003DMT400040069	Potato	cytosol	43.17	83.28
CDY12868	Canola	mitochondrion	30.67	80.7
CDY67096	Canola	mitochondrion	32.67	79.35
CDX75589	Canola	mitochondrion	44.33	74.93
Bra040973.1-P	Field mustard	nucleus	33.5	73.9
VIT_04s0023g01450.t01	Wine grape	nucleus	69.33	73.63
GSMUA_Achr4P16510_001	Banana	nucleus	57.33	72.88
PGSC0003DMT400033041	Potato	nucleus	65.17	70.32
Solyc02g085570.2.1	Tomato	nucleus	65.0	69.89
Solyc02g062920.2.1	Tomato	nucleus	65.17	69.82
HORVU5Hr1G090000.2	Barley	nucleus	46.17	69.77
CDY40492	Canola	nucleus	17.33	69.33
GSMUA_Achr4P11020_001	Banana	nucleus	64.0	66.67
CDY12869	Canola	nucleus	55.0	66.53
AT1G60900.1	Thale cress	nucleus	65.0	66.21
EES08974	Sorghum	nucleus	59.83	65.87
CDY40481	Canola	nucleus	56.33	65.5
CDY35472	Canola	nucleus	59.83	65.27
TraesCS4D01G143400.3	Wheat	nucleus	59.5	65.03
Bra027119.1-P	Field mustard	nucleus	53.17	64.97
HORVU4Hr1G029030.3	Barley	nucleus	59.33	64.73
CDY55407	Canola	nucleus	12.0	64.29
CDY24773	Canola	nucleus	59.33	64.26
Bra010569.1-P	Field mustard	nucleus	59.33	64.26
TraesCS4D01G150000.4	Wheat	nucleus	61.33	64.22
CDY46188	Canola	nucleus	63.5	64.14
Bra031477.1-P	Field mustard	nucleus	63.5	64.14
TraesCS4B01G145600.4	Wheat	nucleus	60.67	63.97
AT1G60830.2	Thale cress	nucleus	11.83	63.96
AT4G36690.1	Thale cress	nucleus	61.0	63.87
Bra040940.1-P	Field mustard	nucleus	59.67	63.7
TraesCS4A01G165000.4	Wheat	nucleus	61.83	63.42
CDY03767	Canola	nucleus	63.33	62.6
CDY66742	Canola	nucleus	58.67	62.08
Os11t0636900-02	Rice	nucleus	59.33	62.02
TraesCS4A01G171800.3	Wheat	nucleus	59.5	61.45
TraesCSU01G068100.3	Wheat	nucleus	59.33	61.38
Solyc12g008750.1.1	Tomato	nucleus	61.17	60.46
PGSC0003DMT400000919	Potato	nucleus	60.67	60.17
KXG28995	Sorghum	nucleus	60.0	60.0
CDY30313	Canola	nucleus	58.0	59.18
HORVU4Hr1G038850.14	Barley	nucleus	59.0	58.51
CDY40493	Canola	nucleus	27.17	58.01
HORVU5Hr1G089980.2	Barley	nucleus, plastid	54.0	56.94
TraesCS5D01G375600.1	Wheat	nucleus	57.17	56.14
CDY55589	Canola	mitochondrion	23.17	55.38
Bra031341.1-P	Field mustard	nucleus	22.67	54.18
TraesCS5A01G366000.1	Wheat	nucleus	54.67	54.13
Bra010656.1-P	Field mustard	mitochondrion, plastid	22.5	53.36
TraesCS5B01G368400.1	Wheat	nucleus	53.17	50.63
KXG29128	Sorghum	nucleus	45.67	43.29
TraesCS2A01G122400.1	Wheat	nucleus	11.5	42.33
TraesCS2B01G144600.1	Wheat	nucleus	11.33	41.72
TraesCS5B01G041900.1	Wheat	nucleus	11.17	40.36
TraesCS5A01G040700.1	Wheat	cytosol	11.0	39.76
TraesCS5D01G071700.1	Wheat	nucleus	8.67	30.23
TraesCS5B01G067400.1	Wheat	nucleus	8.83	28.34
TraesCS5D01G071600.1	Wheat	nucleus	8.67	27.81
Zm00001d007635_P004	Maize	nucleus	27.5	23.44
KRH31685	Soybean	nucleus	17.5	10.66
KRH69095	Soybean	nucleus	5.0	10.07

Protein Annotations

EntrezGene:100779915	MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	EMBL:ACUP02002775	EnsemblPlantsGene:GLYMA_04G255700	GO:GO:0000243
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0008187	GO:GO:0008380	GO:GO:0009987	GO:GO:0016607	GO:GO:0030628
GO:GO:0071004	GO:GO:0089701	UniProt:I1JZD4	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRH64800
ProteinID:KRH64800	ProteinID:KRH64800.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139
PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642
InterPro:U2AF_lg	UniParc:UPI000233A522	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:52206324..52211660

Molecular Weight (calculated)

67643.5 Da

IEP (calculated)

8.306

GRAVY (calculated)

-1.082

Length

600 amino acids

Sequence
(BLAST)

001: MTDYEERYEG NGEEEELHNS HHQPHPDSSP LPTHDDLTDS KSRHGSRDYD RDSSRSRDKE REKGRDRERK REKGRDRERE KSRDRDSERS RDKDRDRDKS
101: KDRERDRDRD GEKERDRDRD RHHRDRHRDR GERRERTRDR DDDDYHRSRD FDRRRDYDRE DKHRRRSRSR SQSRSGGRSE HRSRSRSRSR SKSKRTSGFD
201: MAPPASAMLT GASAVAGQIT GANPTIPGMF PNMFPLATSQ MQQFSALPVM PVQAMTQQAT RHARRVYVGG LPPTANEQSV ATFFSQVMAK IGGNTAGPGD
301: AVVNVYINHD KKFAFVEMRS VEEASNAMAL DGIIFEGAPV KVRRPTDYNP SLAATLGPSQ PNPNLNLGAV GLTPGSAGGL DGPDRVFVGG LPYYFTETQI
401: RELLETFGPL RGFDLVKDRE TGNSKGYAFC VYQDLAVTDI ACAALNGIKM GDKTLTVRRA NQGANPQQPK PEQESILMHA QQQIALQKLM LQPALVATKV
501: VCLTHAVSSD ELKDDEDYEE ILDDMRQECS KFGTLVNVVI PRPPSDGEPA AGVGKVFLEY VDIDGATKAR AGLNGRKFDG NQVVAVFYPE NKFAQGDYEG

Best Arabidopsis Sequence Match ( AT4G36690.1 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.