CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84685	Canola	nucleus	32.89	26.34
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, golgi, plastid	32.55	21.37
KRH31685	Soybean	nucleus	45.64	13.81
Os01t0956600-01	Rice	nucleus	26.85	13.16
VIT_05s0049g01490.t01	Wine grape	nucleus	34.23	10.4
Zm00001d048364_P002	Maize	nucleus	28.52	8.71
OQU93274	Sorghum	nucleus	27.85	8.57
Solyc09g090420.2.1	Tomato	nucleus	30.87	8.33
CDX79530	Canola	nucleus	32.55	8.06
Bra022941.1-P	Field mustard	nucleus	32.89	7.77
AT2G33435.1	Thale cress	nucleus	30.2	6.79
KRH56450	Soybean	nucleus	10.4	5.12
KRH64800	Soybean	nucleus	10.07	5.0
GSMUA_Achr11P...	Banana	nucleus	2.68	1.68
Os03t0138100-01	Rice	nucleus	2.68	1.24

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	UniProt:A0A0R0KQF5	EMBL:ACUP02000688	EnsemblPlantsGene:GLYMA_02G003600	GO:GO:0000243
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0008187	GO:GO:0016607	GO:GO:0030628
GO:GO:0071004	GO:GO:0089701	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRH69095	ProteinID:KRH69095
ProteinID:KRH69095.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF56
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0006ED7B63	:

Description

hypothetical protein

Coordinates

chr2:+:406021..411985

Molecular Weight (calculated)

32655.2 Da

IEP (calculated)

4.028

GRAVY (calculated)

-0.262

Length

298 amino acids

Sequence
(BLAST)

001: MVQVVTIIDM EALQVDLIFI GGISNHLSSE MLVEIAGSFG SLKAYHFETK VSNGSCAFLE YVDHSVTIKA CAGLNGMKLG GEVLTVLQAM PDASPSENAG
101: EPPSYGIPEH AEPLLRKPTQ VLEINNVFAD SIWSLSDVTI EEILDDVRLE CARFGTIKSI NVVKHSSDEN LATKLEECEV INKVDAKDVS QDTNCITNNT
201: EYSFSDKANY SKFKGTNGME IHDNKEMEED KVDEGSSVNV DKSAEVFDDK SCREHLVDDT AVEDAEDKNI PCSIIQECLG QQDTLDDGPE FLDMMVAN

Best Arabidopsis Sequence Match ( AT2G33435.1 )
(BLAST)

0001: MNEVNKQKEN RDGHETLVNE EGSAARTRPT SVEEIRLRRK RKESLENVKE ETVGAAQLLG YDLVEKASDY HESKNLRREE HVEDSSRKEK EAISRCREEK
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G33435]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.