Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84685 | Canola | nucleus | 18.59 | 30.38 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, golgi, plastid | 21.05 | 28.19 |
| KRH69095 | Soybean | nucleus | 13.16 | 26.85 |
| VIT_05s0049g01490.t01 | Wine grape | nucleus | 24.51 | 15.19 |
| KRH31685 | Soybean | nucleus | 22.04 | 13.6 |
| Os11t0636900-02 | Rice | nucleus | 12.66 | 13.41 |
| CDX79530 | Canola | nucleus | 23.03 | 11.63 |
| Solyc09g090420.2.1 | Tomato | nucleus | 20.89 | 11.49 |
| AT2G33435.1 | Thale cress | nucleus | 24.01 | 11.02 |
| Bra022941.1-P | Field mustard | nucleus | 22.7 | 10.94 |
| Os03t0138100-01 | Rice | nucleus | 7.24 | 6.84 |
Protein Annotations
| Gene3D:1.10.510.10 | Gene3D:3.30.70.330 | MapMan:35.2 | EntrezGene:4325413 | EMBL:AK102888 | ProteinID:BAD88141.1 |
| ProteinID:BAD88277.1 | ProteinID:BAF07355.1 | ProteinID:BAS76289.1 | GO:GO:0000243 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0008187 | GO:GO:0016607 | GO:GO:0030628 | GO:GO:0071004 | GO:GO:0089701 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Kinase-like_dom_sf | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os01g0956600 | EnsemblPlants:Os01t0956600-01 |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF56 | UniProt:Q5JJU2 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF56112 | UniParc:UPI00004C2BA5 | RefSeq:XP_015632671.1 |
| SEG:seg | : | : | : | : | : |
Description
Nucleotide-binding, alpha-beta plait domain containing protein. (Os01t0956600-01)
Coordinates
chr1:+:42149782..42156852
Molecular Weight (calculated)
68188.5 Da
IEP (calculated)
7.751
GRAVY (calculated)
-0.111
Length
608 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPDQVEIPF KVLQERVPGK KKYSLRVIKP SSSKKICRSV NSYPLVCLKR EMADNDHVHC IMLTLNHRNI LSMKALSRDK VESNGPSSLA AFVEPYTGLL
101: SSLCFKHDCW GDRINHIPSP LLQSLLRQVI EGLDFLRKNK LYHGNLNWDS ILYLQPSTVK LANFRKQETM SLEEAQWADW LCLIKMLEEI LERAAEISSK
201: LAQCDRYFCG HVESLTALLK TLDKTALPAI KEIVLGHPLF WDLMTRVNFF AKDISLRLND DTFMSRVRAS KIRKLPWNEG TTQDFKGLLF EMETYRKDEG
301: IPAYDFRSLK DYVRCVCGAY AHWNKIKLNV DDIVRQNHPT ICSDIWHLLG SSDMSHADSK KPVEEIKLIS DVVRDSPHKI FIAGIPRVIS SKMLRDIVSS
401: FGQLAAYRFL FNEDLGGACA FLEYIDHSIT SKACAGLNGM KLGGCVITAV GVLTDHPGQA GNEACPFHGI PANPKPLLAV PTQVLQLKNV FDQEEYSLLS
501: KYEVDAVLED VRVKCARYGA VKSINVVEYP AGSDNTKAPA VDARDNALAS NNTALEAGCI LVEFLCKEAS FMAAHSLHGR PFGSRIVSAG YAPYDLLSLP
601: EVFPVLRF
101: SSLCFKHDCW GDRINHIPSP LLQSLLRQVI EGLDFLRKNK LYHGNLNWDS ILYLQPSTVK LANFRKQETM SLEEAQWADW LCLIKMLEEI LERAAEISSK
201: LAQCDRYFCG HVESLTALLK TLDKTALPAI KEIVLGHPLF WDLMTRVNFF AKDISLRLND DTFMSRVRAS KIRKLPWNEG TTQDFKGLLF EMETYRKDEG
301: IPAYDFRSLK DYVRCVCGAY AHWNKIKLNV DDIVRQNHPT ICSDIWHLLG SSDMSHADSK KPVEEIKLIS DVVRDSPHKI FIAGIPRVIS SKMLRDIVSS
401: FGQLAAYRFL FNEDLGGACA FLEYIDHSIT SKACAGLNGM KLGGCVITAV GVLTDHPGQA GNEACPFHGI PANPKPLLAV PTQVLQLKNV FDQEEYSLLS
501: KYEVDAVLED VRVKCARYGA VKSINVVEYP AGSDNTKAPA VDARDNALAS NNTALEAGCI LVEFLCKEAS FMAAHSLHGR PFGSRIVSAG YAPYDLLSLP
601: EVFPVLRF
0001: MNEVNKQKEN RDGHETLVNE EGSAARTRPT SVEEIRLRRK RKESLENVKE ETVGAAQLLG YDLVEKASDY HESKNLRREE HVEDSSRKEK EAISRCREEK
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G33435]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.