Factsheet for Bra040940.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66742	Canola	nucleus	96.09	95.24
PGSC0003DMT400040069	Potato	cytosol	43.77	79.1
Bra040973.1-P	Field mustard	nucleus	32.21	66.54
HORVU5Hr1G090000.2	Barley	nucleus	46.62	66.0
GSMUA_Achr4P16510_001	Banana	nucleus	55.34	65.89
Bra010569.1-P	Field mustard	nucleus	64.95	65.88
PGSC0003DMT400033041	Potato	nucleus	62.81	63.49
Solyc02g085570.2.1	Tomato	nucleus	62.81	63.26
Solyc02g062920.2.1	Tomato	nucleus	62.46	62.68
VIT_13s0139g00410.t01	Wine grape	cytosol	7.47	61.76
Bra027119.1-P	Field mustard	nucleus	52.31	59.88
HORVU4Hr1G029030.3	Barley	nucleus	58.54	59.82
KRH64800	Soybean	nucleus	63.7	59.67
EES08974	Sorghum	nucleus	57.65	59.45
TraesCS4D01G143400.3	Wheat	nucleus	58.01	59.38
TraesCS4B01G145600.4	Wheat	nucleus	59.61	58.88
TraesCS4D01G150000.4	Wheat	nucleus	59.43	58.29
GSMUA_Achr4P11020_001	Banana	nucleus	59.61	58.16
KRH56450	Soybean	nucleus	61.74	57.36
TraesCS4A01G165000.4	Wheat	nucleus	59.07	56.75
Os11t0636900-02	Rice	nucleus	57.83	56.62
TraesCS4A01G171800.3	Wheat	nucleus	58.19	56.28
Bra031477.1-P	Field mustard	nucleus	59.25	56.06
TraesCSU01G068100.3	Wheat	nucleus	57.83	56.03
HORVU4Hr1G038850.14	Barley	nucleus	58.19	54.05
KXG28995	Sorghum	nucleus	57.3	53.67
Solyc12g008750.1.1	Tomato	nucleus	57.47	53.21
PGSC0003DMT400000919	Potato	nucleus	56.58	52.56
HORVU5Hr1G089980.2	Barley	nucleus, plastid	52.14	51.49
TraesCS5D01G375600.1	Wheat	nucleus	53.74	49.43
Bra010656.1-P	Field mustard	mitochondrion, plastid	22.06	49.01
Bra031341.1-P	Field mustard	nucleus	21.89	49.0
TraesCS5A01G366000.1	Wheat	nucleus	52.67	48.84
TraesCS5B01G368400.1	Wheat	nucleus	51.6	46.03
KXG29128	Sorghum	nucleus	44.66	39.65
TraesCS2A01G122400.1	Wheat	nucleus	11.03	38.04
TraesCS2B01G144600.1	Wheat	nucleus	10.68	36.81
TraesCS5B01G041900.1	Wheat	nucleus	10.85	36.75
TraesCS5A01G040700.1	Wheat	cytosol	10.68	36.14
VIT_13s0139g00390.t01	Wine grape	plasma membrane	9.43	33.97
TraesCS5D01G071700.1	Wheat	nucleus	9.96	32.56
TraesCS5D01G071600.1	Wheat	nucleus	10.32	31.02
TraesCS5B01G067400.1	Wheat	nucleus	10.14	30.48
Zm00001d007635_P004	Maize	nucleus	25.44	20.31
Bra022941.1-P	Field mustard	nucleus	18.86	8.41

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra040940	EnsemblPlants:Bra040940.1	EnsemblPlants:Bra040940.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4FIL1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI000253EACD	SEG:seg	:

Description

AT4G36690 (E=4e-188) ATU2AF65A | ATU2AF65A; RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrScaffold000321:-:5792..9345

Molecular Weight (calculated)

62061.3 Da

IEP (calculated)

6.739

GRAVY (calculated)

-0.872

Length

562 amino acids

Sequence
(BLAST)

001: MSDYEENGVA GDGFHSEDGG GRGGEIDDHR DSKSEKEMLD TEKDPGSKEE ESRVKGRDRD HERRRDRDGE RIKRRDDRDE DRGRDRDRHH RSRHRDRSVE
101: RGDRRERARG DDDDYRRSRD RDFDRRRDYD KDRGDRRRRR SRSRGRSERR SRSPSKSKRV SGFDMAPPAS GMLDAGSAFT GQVPAPSPNL LPGNGMFPLQ
201: PGQPFGGVPM MPIQAMTQQA TRHARRVYVG GLSPSANEQS VATFFSQAMA AIGGNSAGPG DAVVNVYINY EKKFAFVEMR SVQEASNAMT LDGIIFEGAP
301: VKVRRPSDYN PALAATLGPS QPIPNLNLAA VGLTPGGAGA LEGPDRLFVG GLPYYIPESQ IRELLESLGA LKGFDLVRDR ETGNSKGYAF CAYQDPAVTD
401: IACAALNGIT MGDKTLCVRR ANQGANQTKP EQESVLLHAQ QQVAFQKIML QQGTAAAAAT KVVCLTQVVT EDELRNDEEY EDIVVDMRDE GGKFGALTKV
501: VIPRPSSNGE PVQGVGKVFL EYAETESSSR ARNGMNGRKF GGNEVVAVFY PEDKFEQADY SL

Best Arabidopsis Sequence Match ( AT4G36690.1 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.