CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040940.1-P	Field mustard	nucleus	95.24	96.09
CDY30313	Canola	nucleus	83.77	80.78
CDY67096	Canola	mitochondrion	34.39	78.95
PGSC0003DMT400040069	Potato	cytosol	43.03	78.46
CDX75589	Canola	mitochondrion	48.15	76.9
CDY12868	Canola	mitochondrion	30.16	75.0
CDY35472	Canola	nucleus	65.26	67.27
CDY24773	Canola	nucleus	64.02	65.52
GSMUA_Achr4P16510_001	Banana	nucleus	54.32	65.25
HORVU5Hr1G090000.2	Barley	nucleus	45.68	65.24
Solyc02g085570.2.1	Tomato	nucleus	62.43	63.44
PGSC0003DMT400033041	Potato	nucleus	62.08	63.31
Solyc02g062920.2.1	Tomato	nucleus	61.73	62.5
VIT_13s0139g00410.t01	Wine grape	cytosol	7.41	61.76
CDY55407	Canola	nucleus	11.99	60.71
CDY40492	Canola	nucleus	15.87	60.0
CDY40481	Canola	nucleus	54.5	59.88
CDY12869	Canola	nucleus	52.2	59.68
HORVU4Hr1G029030.3	Barley	nucleus	57.85	59.64
TraesCS4D01G143400.3	Wheat	nucleus	57.32	59.2
EES08974	Sorghum	nucleus	56.61	58.9
KRH64800	Soybean	nucleus	62.08	58.67
TraesCS4B01G145600.4	Wheat	nucleus	58.73	58.52
GSMUA_Achr4P11020_001	Banana	nucleus	59.44	58.51
TraesCS4D01G150000.4	Wheat	nucleus	58.55	57.94
KRH56450	Soybean	nucleus	60.49	56.69
TraesCS4A01G165000.4	Wheat	nucleus	58.2	56.41
CDY46188	Canola	nucleus	58.91	56.23
TraesCS4A01G171800.3	Wheat	nucleus	57.32	55.94
Os11t0636900-02	Rice	nucleus	56.61	55.92
TraesCSU01G068100.3	Wheat	nucleus	57.14	55.86
CDY03767	Canola	nucleus	58.38	54.53
KXG28995	Sorghum	nucleus	55.91	52.83
HORVU4Hr1G038850.14	Barley	nucleus	56.26	52.73
CDY40493	Canola	nucleus	25.93	52.31
Solyc12g008750.1.1	Tomato	nucleus	55.91	52.22
PGSC0003DMT400000919	Potato	nucleus	55.38	51.9
HORVU5Hr1G089980.2	Barley	nucleus, plastid	51.5	51.32
CDY55589	Canola	mitochondrion	22.05	49.8
TraesCS5D01G375600.1	Wheat	nucleus	53.62	49.75
TraesCS5A01G366000.1	Wheat	nucleus	52.2	48.84
TraesCS5B01G368400.1	Wheat	nucleus	51.15	46.03
KXG29128	Sorghum	nucleus	44.09	39.49
TraesCS2A01G122400.1	Wheat	nucleus	10.93	38.04
TraesCS2B01G144600.1	Wheat	nucleus	10.58	36.81
TraesCS5B01G041900.1	Wheat	nucleus	10.76	36.75
TraesCS5A01G040700.1	Wheat	cytosol	10.58	36.14
VIT_13s0139g00390.t01	Wine grape	plasma membrane	9.35	33.97
TraesCS5D01G071700.1	Wheat	nucleus	9.7	31.98
TraesCS5D01G071600.1	Wheat	nucleus	10.23	31.02
TraesCS5B01G067400.1	Wheat	nucleus	9.88	29.95
Zm00001d007635_P004	Maize	nucleus	25.4	20.45
CDX84685	Canola	nucleus	7.23	11.02
CDX79530	Canola	nucleus	19.05	8.97
CDX84686	Canola	nucleus	8.47	5.35

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:A0A078JN02	UniProt:A0A078JN02	EnsemblPlants:CDY66742	ProteinID:CDY66742
ProteinID:CDY66742.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00055659001	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI0004EE6033
SEG:seg	:	:	:	:	:

Description

BnaCnng52160DBnaCnng52160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JN02]

Coordinates

chrLK035435:-:6239..10079

Molecular Weight (calculated)

62811.1 Da

IEP (calculated)

6.740

GRAVY (calculated)

-0.879

Length

567 amino acids

Sequence
(BLAST)

001: MSDYEENGAS GDGFHSEDGG VRRGEIDDHR DSKSEKEMLD NENDPGSKEE ESRVKGRDKE RDRDRERRRD REGERIKRHD DRDEDRGRDR DRHHRSRHRD
101: RSVERGERRE RARGDDDDYR RSRDRDFDRL RRDYDKDRGD RRRRRSRSRG RSERRSRSPS KSKRVSGFDM APPASGMLDA GSAFTGQVPA PSPNLLPGNG
201: MFPLQAGQAF GGVAMMPIQA MTQQATRHAR RVYVGGLSPS ANEQSVATFF SQAMAAIGGN SAGPGDAVVN VYINYEKKFA FVEMRSVQEA SNAMTLDGII
301: FEASPVKVRR PSDYNPALAA TLGPSQPIPN LNLAAVGLTP GGAGALEGPD RLFVGGLPYY IPESQIRELL ESLGALKGFD LVRDRETGNS KGYAFCAYQD
401: PAVTDIACAA LNGITMGDKT LCVRRANQGA NQTKPEQESV LLHAQQQVAF QKIMLQQGTA AAAATKVVCL TQVVTEDELR NDEEYEDIVV DMRDEGGKFG
501: ALTKVVIPRP SSNGEPVQGV GKVFLEYAET ESSSRARNGM NGRKFGGNEV VAVFYPEDKF EQADYSL

Best Arabidopsis Sequence Match ( AT4G36690.4 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGGR RSRRSRSRSK DRSERRTRSR SPSKSKQRVS GFDMAPPASA MLAAGAAVTG QVPPAPPTLP GAGMFPNMFP LPTGQSFGGL
201: SMMPIQAMTQ QATRHARRVY VGGLSPTANE QSVATFFSQV MAAVGGNTAG PGDAVVNVYI NHEKKFAFVE MRSVEEASNA MSLDGIIFEG APVKVRRPSD
301: YNPSLAATLG PSQPSPHLNL AAVGLTPGAS GGLEGPDRIF VGGLPYYFTE SQVRELLESF GGLKGFDLVK DRETGNSKGY AFCVYQDLSV TDIACAALNG
401: IKMGDKTLTV RRANQGTMLQ KPEQENVLLH AQQQIAFQRV MLQPGAVATT VVCLTQVVTE DELRDDEEYG DIMEDMRQEG GKFGALTNVV IPRPSPNGEP
501: VAGLGKVFLK YADTDGSTRA RFGMNGRKFG GNEVVAVYYP EDKFEQGDYG A

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.