Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55407 | Canola | nucleus | 66.67 | 89.29 |
| AT1G60830.2 | Thale cress | nucleus | 59.33 | 80.18 |
| Bra040973.1-P | Field mustard | nucleus | 96.0 | 52.94 |
| PGSC0003DMT400040069 | Potato | cytosol | 65.33 | 31.51 |
| TraesCS5A01G040700.1 | Wheat | cytosol | 30.67 | 27.71 |
| TraesCS5B01G041900.1 | Wheat | nucleus | 30.67 | 27.71 |
| TraesCS2A01G122400.1 | Wheat | nucleus | 30.0 | 27.61 |
| TraesCS2B01G144600.1 | Wheat | nucleus | 29.33 | 26.99 |
| CDX75589 | Canola | mitochondrion | 62.67 | 26.48 |
| CDY12869 | Canola | nucleus | 87.33 | 26.41 |
| CDY40481 | Canola | nucleus | 90.0 | 26.16 |
| TraesCS5D01G071700.1 | Wheat | nucleus | 28.0 | 24.42 |
| TraesCS5B01G067400.1 | Wheat | nucleus | 28.0 | 22.46 |
| TraesCS5D01G071600.1 | Wheat | nucleus | 28.0 | 22.46 |
| CDY46188 | Canola | nucleus | 87.33 | 22.05 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 68.0 | 21.61 |
| CDY03767 | Canola | nucleus | 86.67 | 21.42 |
| HORVU5Hr1G090000.2 | Barley | nucleus | 56.0 | 21.16 |
| AT1G60900.1 | Thale cress | nucleus | 82.67 | 21.05 |
| PGSC0003DMT400033041 | Potato | nucleus | 67.33 | 18.17 |
| Solyc02g085570.2.1 | Tomato | nucleus | 66.67 | 17.92 |
| TraesCS4D01G143400.3 | Wheat | nucleus | 65.33 | 17.85 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 68.0 | 17.71 |
| HORVU4Hr1G029030.3 | Barley | nucleus | 64.67 | 17.64 |
| CDY35472 | Canola | nucleus | 64.67 | 17.64 |
| EES08974 | Sorghum | nucleus | 64.0 | 17.61 |
| TraesCS4B01G145600.4 | Wheat | nucleus | 66.67 | 17.57 |
| CDY24773 | Canola | nucleus | 64.67 | 17.51 |
| Solyc02g062920.2.1 | Tomato | nucleus | 65.33 | 17.5 |
| TraesCS4D01G150000.4 | Wheat | nucleus | 66.67 | 17.45 |
| KRH64800 | Soybean | nucleus | 69.33 | 17.33 |
| PGSC0003DMT400000919 | Potato | nucleus | 69.33 | 17.19 |
| KRH56450 | Soybean | nucleus | 69.33 | 17.19 |
| TraesCS4A01G165000.4 | Wheat | nucleus | 66.67 | 17.09 |
| TraesCSU01G068100.3 | Wheat | nucleus | 65.33 | 16.9 |
| TraesCS4A01G171800.3 | Wheat | nucleus | 65.33 | 16.87 |
| Solyc12g008750.1.1 | Tomato | nucleus | 68.0 | 16.8 |
| Os11t0636900-02 | Rice | nucleus | 61.33 | 16.03 |
| CDY66742 | Canola | nucleus | 60.0 | 15.87 |
| HORVU4Hr1G038850.14 | Barley | nucleus | 63.33 | 15.7 |
| CDY67096 | Canola | mitochondrion | 25.33 | 15.38 |
| KXG28995 | Sorghum | nucleus | 61.33 | 15.33 |
| CDY30313 | Canola | nucleus | 60.0 | 15.31 |
| HORVU5Hr1G089980.2 | Barley | nucleus, plastid | 56.0 | 14.76 |
| TraesCS5A01G366000.1 | Wheat | nucleus | 58.67 | 14.52 |
| CDY55589 | Canola | mitochondrion | 24.0 | 14.34 |
| TraesCS5D01G375600.1 | Wheat | nucleus | 58.0 | 14.24 |
| TraesCS5B01G368400.1 | Wheat | nucleus | 56.0 | 13.33 |
| KXG29128 | Sorghum | nucleus | 55.33 | 13.11 |
| VIT_13s0139g00390.t01 | Wine grape | plasma membrane | 8.67 | 8.33 |
| VIT_13s0139g00410.t01 | Wine grape | cytosol | 3.33 | 7.35 |
| CDY12868 | Canola | mitochondrion | 10.67 | 7.02 |
| CDX84685 | Canola | nucleus | 16.67 | 6.72 |
| Zm00001d007635_P004 | Maize | nucleus | 11.33 | 2.41 |
| CDX79530 | Canola | nucleus | 16.67 | 2.08 |
| CDX84686 | Canola | nucleus | 9.33 | 1.56 |
| CDY40493 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY40492 | EnsemblPlantsGene:GSBRNA2T00069763001 | Gene3D:3.30.70.330 | GO:A0A078HRN9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF80 |
| ProteinID:CDY40492 | ProteinID:CDY40492.1 | SUPFAM:SSF54928 | UniParc:UPI0004EE39D1 | UniProt:A0A078HRN9 | MapMan:16.4.1.2.11.2 |
Description
BnaC09g14500DBnaC09g14500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRN9]
Coordinates
chrLK032472:-:232110..233040
Molecular Weight (calculated)
16695.0 Da
IEP (calculated)
7.594
GRAVY (calculated)
-0.667
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDKTLTVRR AVQGGVQPKP EQKDRLLHTK QQIALQRLML QPGGTPTKIV CLTHVVTANV LGDDKEYEEI MEDMRQEGGK LGNLVNVVIP RPNPEHDPTP
101: GVEKVFLEYA DLDGAAKARS GMNGRKFRGN QVVAVYYPEN KYAQGDYEGY
101: GVEKVFLEYA DLDGAAKARS GMNGRKFRGN QVVAVYYPEN KYAQGDYEGY
001: MLQPGGTPTK IVCLTQVVTA DDLRDDAEYA DIMEDMSQEG GKFGNLVNVV IPRPNPDHDP TPGVGKVFLE YADVDGSSKA RSGMNGRKFG GNQVVAVYYP
101: EDKYAQGDYE D
101: EDKYAQGDYE D
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9C6C1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.