Factsheet for AT4G36690.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67096	Canola	mitochondrion	37.7	87.45
CDX75589	Canola	mitochondrion	53.58	86.48
PGSC0003DMT400040069	Potato	cytosol	44.15	81.35
CDY35472	Canola	nucleus	72.25	75.27
Bra010569.1-P	Field mustard	nucleus	71.73	74.19
CDY24773	Canola	nucleus	71.73	74.19
HORVU5Hr1G090000.2	Barley	nucleus	49.56	71.54
AT1G60830.2	Thale cress	nucleus	13.79	71.17
GSMUA_Achr4P16510_001	Banana	nucleus	57.42	69.7
Solyc02g085570.2.1	Tomato	nucleus	65.27	67.03
PGSC0003DMT400033041	Potato	nucleus	64.4	66.37
Solyc02g062920.2.1	Tomato	nucleus	61.43	62.86
TraesCS4D01G143400.3	Wheat	nucleus	60.21	62.84
HORVU4Hr1G029030.3	Barley	nucleus	59.69	62.18
GSMUA_Achr4P11020_001	Banana	nucleus	62.13	61.81
VIT_13s0139g00410.t01	Wine grape	cytosol	7.33	61.76
AT1G60900.1	Thale cress	nucleus	63.35	61.63
EES08974	Sorghum	nucleus	58.46	61.47
KRH64800	Soybean	nucleus	63.87	61.0
KRH56450	Soybean	nucleus	64.22	60.83
TraesCS4B01G145600.4	Wheat	nucleus	60.21	60.63
TraesCS4D01G150000.4	Wheat	nucleus	59.51	59.51
TraesCSU01G068100.3	Wheat	nucleus	59.69	58.97
TraesCS4A01G165000.4	Wheat	nucleus	60.03	58.8
Os11t0636900-02	Rice	nucleus	58.81	58.71
TraesCS4A01G171800.3	Wheat	nucleus	59.34	58.52
KXG28995	Sorghum	nucleus	60.38	57.67
PGSC0003DMT400000919	Potato	nucleus	59.16	56.03
Solyc12g008750.1.1	Tomato	nucleus	59.34	56.01
HORVU5Hr1G089980.2	Barley	nucleus, plastid	55.32	55.71
HORVU4Hr1G038850.14	Barley	nucleus	58.29	55.21
TraesCS5A01G366000.1	Wheat	nucleus	56.37	53.3
TraesCS5D01G375600.1	Wheat	nucleus	56.2	52.7
TraesCS5B01G368400.1	Wheat	nucleus	53.93	49.05
KXG29128	Sorghum	nucleus	45.72	41.39
TraesCS2B01G144600.1	Wheat	nucleus	11.34	39.88
TraesCS2A01G122400.1	Wheat	nucleus	11.34	39.88
TraesCS5B01G041900.1	Wheat	nucleus	11.34	39.16
TraesCS5A01G040700.1	Wheat	cytosol	10.82	37.35
VIT_13s0139g00390.t01	Wine grape	plasma membrane	9.6	35.26
TraesCS5D01G071700.1	Wheat	nucleus	9.42	31.4
TraesCS5D01G071600.1	Wheat	nucleus	9.77	29.95
TraesCS5B01G067400.1	Wheat	nucleus	9.6	29.41
Zm00001d007635_P004	Maize	nucleus	25.31	20.6
AT2G33435.1	Thale cress	nucleus	17.8	7.7

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	EntrezGene:829822	UniProt:A0A178UYD2	ProteinID:AEE86687.1	ProteinID:AEE86688.1
ProteinID:AEE86689.1	EMBL:AF462805	ArrayExpress:AT4G36690	EnsemblPlantsGene:AT4G36690	RefSeq:AT4G36690	TAIR:AT4G36690
RefSeq:AT4G36690-TAIR-G	EnsemblPlants:AT4G36690.1	TAIR:AT4G36690.1	Symbol:ATU2AF65A	EMBL:AY080711	EMBL:AY143980
Unigene:At.21204	EMBL:BT000965	EMBL:BX827587	ProteinID:CAB16828.1	ProteinID:CAB80335.1	GO:GO:0000243
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005681
GO:GO:0006139	GO:GO:0006397	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008187
GO:GO:0008380	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0016607	GO:GO:0030628
GO:GO:0042742	GO:GO:0071004	GO:GO:0089701	InterPro:IPR000504	InterPro:IPR012677	RefSeq:NP_195387.1
RefSeq:NP_849509.1	RefSeq:NP_974695.1	InterPro:Nucleotide-bd_a/b_plait_sf	UniProt:O23212	ProteinID:OAO97671.1	PFAM:PF00076
PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016
PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50102	PANTHER:PTHR23139
PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642
InterPro:U2AF_lg	UniParc:UPI00000AC29F	SEG:seg	:	:	:

Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]

Coordinates

chr4:-:17293947..17297728

Molecular Weight (calculated)

63555.0 Da

IEP (calculated)

8.105

GRAVY (calculated)

-0.926

Length

573 amino acids

Sequence
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.