Factsheet for Bra019944.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93437	Canola	nucleus	69.34	81.42
Bra018446.1-P	Field mustard	nucleus	54.49	37.35
Bra027459.1-P	Field mustard	nucleus	13.28	23.37
Bra010926.1-P	Field mustard	nucleus	12.5	22.38
Bra030057.1-P	Field mustard	nucleus	10.74	21.48
GSMUA_Achr11P...	Banana	extracellular	1.95	9.09

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra019944	EnsemblPlants:Bra019944.1	EnsemblPlants:Bra019944.1-P	ncoils:Coil
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046872	GO:GO:0089701	InterPro:IPR000571	InterPro:IPR012677	UniProt:M4DTV1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00642	PRINTS:PR01848	PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF4
InterPro:U2AF_small	UniParc:UPI000253EA0D	InterPro:Znf_CCCH	SEG:seg	:	:

Description

AT1G10320 (E=2e-069) | U2 snRNP auxiliary factor-related

Coordinates

chrA06:-:3568199..3571420

Molecular Weight (calculated)

59782.7 Da

IEP (calculated)

7.017

GRAVY (calculated)

-1.452

Length

512 amino acids

Sequence
(BLAST)

001: MSRKEKRKAM KKMKRKEVAE KEREDAEAKL NDPAEQEKLK EIEEEEAKKR DKESKEFEDS ERAWREAMEE GGPPDIIFKG NEIILRKNKV KVPKKPVAAQ
101: VDVNEIVDRP TSNPLPPGIE AFSKYQNFSS AQQILDTEQD KAHCPFHLKT GACRFGPRCS RVHFHPDKSC TILMKNMCNG PGIAWEQDEG LEYTDEEAEH
201: FYEEFYEDVT EFQKYGELIN FKTCSRGSAC NFIHGFLNPG GDYEWADHDK PPPRFWIRKM TALFGYSDEY VKHMEFEYSG SLTDFRSDQP TDSHRQLSRR
301: SRSRDHDHVN VGSKPCHRNS KNHCDSTRGH KLSRHEEKRH GGDESPTSTR DGSLEKEIYK ERRYAKETTR HESKWSEHSH GQRVMKKRIN GRYPVDDSPD
401: GDDDGRGETG HRRKSSKRHG RRGSDSETQE RLEDEEDTRT HWSSSDRRAR REEHREGSSG DQEESHHAHD RVVHADKSHL ERWKHGHERS TAQDFHTRSE
501: RILTEAGKET MP

Best Arabidopsis Sequence Match ( AT1G10320.2 )
(BLAST)

001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.