Factsheet for PGSC0003DMT400044987

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000674
PGSC0003DMT400009464
PGSC0003DMT400019919	nucleus
PGSC0003DMT400026313
PGSC0003DMT400029367
PGSC0003DMT400029670
PGSC0003DMT400036729
PGSC0003DMT400037076
PGSC0003DMT400037077
PGSC0003DMT400037827	nucleus
PGSC0003DMT400041637	nucleus
PGSC0003DMT400044280
PGSC0003DMT400048580
PGSC0003DMT400057824
PGSC0003DMT400065677
PGSC0003DMT400069582
PGSC0003DMT400070712
PGSC0003DMT400075431
PGSC0003DMT400076291	nucleus
PGSC0003DMT400084196

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67580.1	PGSC0003DMT400036729	AT1G09760.1	20706207
AT1G67580.1	PGSC0003DMT400029367	AT1G61870.1	20706207
AT1G67580.1	PGSC0003DMT400026313	AT2G18740.1	20706207
AT1G67580.1	PGSC0003DMT400065677	AT2G18740.1	20706207
AT1G67580.1	PGSC0003DMT400069582	AT2G18740.1	20706207
AT1G67580.1	PGSC0003DMT400009464	AT2G26430.1	20706207
AT1G67580.1	PGSC0003DMT400057824	AT2G26430.1	20706207
AT1G67580.1	PGSC0003DMT400019919	AT2G32710.1	20407024
AT1G67580.1	PGSC0003DMT400076291	AT2G32710.1	20407024
AT1G67580.1	PGSC0003DMT400044280	AT2G33340.1	20706207
AT1G67580.1	PGSC0003DMT400075431	AT2G33340.1	20706207
AT1G67580.1	PGSC0003DMT400000674	AT2G46610.1	20706207
AT1G67580.1	PGSC0003DMT400048580	AT2G46610.1	20706207
AT1G67580.1	PGSC0003DMT400029670	AT2G47640.1	20706207
AT1G67580.1	PGSC0003DMT400070712	AT3G04620.1	20706207
AT1G67580.1	PGSC0003DMT400029670	AT3G62840.1	20706207
AT1G67580.1	PGSC0003DMT400037076	AT4G25550.1	20706207
AT1G67580.1	PGSC0003DMT400037077	AT4G25550.1	20706207
AT1G67580.1	PGSC0003DMT400084196	AT4G25550.1	20706207
AT1G67580.1	PGSC0003DMT400037827	AT5G10440.1	20407024
AT1G67580.1	PGSC0003DMT400041637	AT5G10440.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014760.2.1	Tomato	nucleus	96.61	95.18
PGSC0003DMT400034649	Potato	nucleus	92.6	89.89
GSMUA_Achr8P01120_001	Banana	nucleus	50.31	69.38
VIT_01s0010g02550.t01	Wine grape	nucleus	64.62	68.3
KRH42643	Soybean	nucleus	62.11	66.44
KRH58745	Soybean	nucleus	62.11	66.35
PGSC0003DMT400086876	Potato	cytosol	26.1	66.03
PGSC0003DMT400092022	Potato	cytosol	17.94	65.9
GSMUA_Achr5P25400_001	Banana	nucleus	56.84	64.9
GSMUA_Achr8P08900_001	Banana	nucleus	51.57	63.33
KRH31446	Soybean	nucleus	58.34	62.67
CDY01821	Canola	nucleus	54.45	62.27
Bra004236.1-P	Field mustard	nucleus	55.33	62.2
CDX96081	Canola	nucleus	55.33	62.2
GSMUA_Achr11P...	Banana	nucleus	53.95	61.6
AT1G67580.1	Thale cress	nucleus	57.47	60.9
KRG97452	Soybean	nucleus	47.05	59.9
EES12419	Sorghum	nucleus	51.57	59.39
Zm00001d003222_P016	Maize	nucleus	51.69	59.03
Os04t0488000-01	Rice	nucleus	52.57	59.01
TraesCS2D01G345200.4	Wheat	nucleus	52.82	57.99
TraesCS2A01G346500.1	Wheat	nucleus	52.7	57.85
TraesCS2B01G364800.5	Wheat	nucleus	52.82	57.28
Zm00001d025739_P006	Maize	nucleus	51.44	56.94
EES05381	Sorghum	nucleus	47.8	56.44
TraesCS6B01G244100.1	Wheat	nucleus	47.18	56.2
TraesCS6A01G214100.1	Wheat	nucleus	47.55	56.15
Zm00001d017128_P002	Maize	nucleus	46.55	55.87
Os02t0602100-02	Rice	nucleus	48.56	55.84
TraesCS6D01G196700.1	Wheat	nucleus	47.05	55.56
HORVU2Hr1G084400.1	Barley	nucleus	52.07	55.11
HORVU6Hr1G054600.5	Barley	nucleus	46.67	54.79
PGSC0003DMT400075349	Potato	cytosol	17.31	46.94
PGSC0003DMT400071215	Potato	cytosol	16.94	44.55
PGSC0003DMT400025910	Potato	cytosol	17.19	43.49
PGSC0003DMT400047738	Potato	cytosol	15.93	41.91
PGSC0003DMT400077428	Potato	cytosol	13.93	37.25
PGSC0003DMT400065635	Potato	cytosol	14.18	36.22
PGSC0003DMT400032131	Potato	cytosol	16.81	31.98
PGSC0003DMT400047517	Potato	cytosol	15.68	27.78
PGSC0003DMT400051979	Potato	cytosol	14.93	27.23

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102584026	MapMan:13.1.1.2.7	MapMan:18.4.3.1.7	Gene3D:3.30.200.20	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1BGY0	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400017448
PGSC:PGSC0003DMG400017448	EnsemblPlants:PGSC0003DMT400044987	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF332
InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000295D9E4	RefSeq:XP_006341740.1
SEG:seg	:	:	:	:	:

Description

Cdk10/11 [Source:PGSC_GENE;Acc:PGSC0003DMG400017448]

Coordinates

chr5:+:12293610..12302665

Molecular Weight (calculated)

89577.2 Da

IEP (calculated)

6.843

GRAVY (calculated)

-0.857

Length

797 amino acids

Sequence
(BLAST)

001: MAAGRHGGYR DNEFRGREAE FEVSRRELGY SKGDYERIRS EDRDFDRDRV HDRSGRDRGR LRQRDIKERD MVNGSFRSMS SRSDSGSSDG DGGGARRSGG
101: LSVRAVDREP IKERDMINGS YRSGSSRSDS GSSDGDAGGM RRSGLSVRAV DREPGELSSE SGSDGAIESD QKTKNAANGN QSSVQSKKRK YSPIIWDRED
201: KEVNRMSKSR NSPVAAKLPP PPPLPKSSGQ LANFPPERVE QVSLLNTNNV HSMEPSPSNT NTALGLLMDA SHESPVDICS PPVDEEQLLS QEARKVEDEE
301: YVPVPTIRSS RWATDADSPA DEGEISGDDT PLLKKRRAVS QSAEMGGRRK SLTPEYEELK RESSGGNRTR SSDSDEHIRS CSRESYQGNE LDKNDSMDVD
401: KDRNYDGTSV SQSDTESEDE HDSRGTPEAA LPPQRSVNML QGCRSVDEFE RLNRIDEGTY GVVYRAKDKK TGEIVALKKV KMEKEREGFP LTSLREINIL
501: LSLHHPSIVD VKEVVVRSSL DSIFMVMEYM EHDLKALMET MKKPFTQSEV KCLMLQLLHG VKYLHDNWVL HRDLKTSNLL LNNQGELKIC DFGLARQYGS
601: PLKPYTHLVV TLWYRAPELL LGAKQYSTAI DMWSLGCIMA EMLCKEPLFN GKTEVDQIDK IFRILGTPNE TIWPGFSKLP GVKVNFVKHQ FNNLRNKFQS
701: PTTSYMGKPD LSESGLDLLN KLLTYDPAKR ISADAALNHE WFREVPLPKS KEFMPTFPAQ HAQDRRVRRV MKSPDPLEEQ RRKELKQGVL GTGGLFG

Best Arabidopsis Sequence Match ( AT1G67580.2 )
(BLAST)

001: MAAGRNIRYP DHELRDQESN SRFSRRDSAY ANEDYNHVRN GAIDNGKGRV SNLRHGDRDR IKSGARQEEN KMVSSGFRLS KSNPGSREVF IDLGPKRCGF
101: SARSVDREPG ELSSESGSDD LIESESLAKV NGVVKEVENR AQSPVEKKRK FSPIVWDRDD HERSNLSRNE KPVEVTPLPP PPPLVKRSSQ SPSVSCGGNS
201: HYSPAKSDMH QDPVEVGVSA VSMPALSPSV EMSSLCVVEQ SSNAEQDDKQ EHATHLEEDE NMPTRHISSS RWAAGNSSPT DEVEIVEEVG EKKRRKKPFP
301: VQGRFRNTSQ TPEVGELVRE GYRSSDSDER GHHSLPGSRD DFEERDAVKS DKMEIDEEEH RRENSVDSLS ETDSDDEYVR HETPEPASTP LRSINMLQGC
401: RSVDEFERLN KIDEGTYGVV YRAKDKKTGE IVALKKVKME KEREGFPLTS LREINILLSF HHPSIVDVKE VVVGSSLDSI FMVMEYMEHD LKALMETMKQ
501: RFSQSEVKCL MLQLLEGVKY LHDNWVLHRD LKTSNLLLNN RGELKICDFG LARQYGSPLK PYTHLVVTLW YRAPELLLGA KQYSTAIDMW SLGCIMAELL
601: MKAPLFNGKT EFDQLDKIFR ILGTPNESIW PGFSKLPGVK VNFVKHQYNL LRKKFPATSF TGAPVLSDAG FDLLNKLLTY DPERRITVNE ALKHDWFREV
701: PLPKSKDFMP TFPAQHAQDR RGRRMVKSPD PLEEQRRKEL TQTELGSGGL FG

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAG1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.