Factsheet for PGSC0003DMT400065677

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098470.2.1	Tomato	cytosol, mitochondrion	98.86	98.86
EES00066	Sorghum	cytosol, mitochondrion	94.32	94.32
KRH63981	Soybean	nucleus	94.32	94.32
KRH53956	Soybean	cytosol, mitochondrion	94.32	94.32
GSMUA_Achr2P04990_001	Banana	cytosol, mitochondrion	94.32	94.32
PGSC0003DMT400069582	Potato	cytosol, mitochondrion	94.32	94.32
VIT_17s0000g03570.t01	Wine grape	cytosol, mitochondrion	94.32	94.32
KRH18975	Soybean	nucleus	93.18	93.18
Os08t0151400-01	Rice	cytosol, nucleus	67.05	92.19
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	92.05	92.05
Os02t0126700-01	Rice	nucleus	92.05	92.05
KRH02922	Soybean	nucleus	92.05	92.05
Zm00001d008916_P001	Maize	mitochondrion	92.05	92.05
GSMUA_Achr10P...	Banana	cytosol	26.14	92.0
TraesCS7A01G304400.1	Wheat	cytosol, mitochondrion	90.91	90.91
AT4G30330.1	Thale cress	cytosol, mitochondrion	90.91	90.91
TraesCS7D01G299900.1	Wheat	cytosol, mitochondrion	90.91	90.91
CDY49311	Canola	cytosol, mitochondrion	90.91	90.91
AT2G18740.1	Thale cress	cytosol, mitochondrion	90.91	90.91
CDY59607	Canola	cytosol, mitochondrion	88.64	90.7
CDY29245	Canola	cytosol, mitochondrion	88.64	90.7
CDY13008	Canola	cytosol, mitochondrion	88.64	90.7
Bra024458.1-P	Field mustard	cytosol, mitochondrion	88.64	90.7
TraesCSU01G017200.1	Wheat	cytosol, mitochondrion	87.5	89.53
PGSC0003DMT400026313	Potato	mitochondrion	95.45	89.36
Zm00001d023900_P001	Maize	endoplasmic reticulum, extracellular	52.27	68.66
TraesCS6A01G089100.2	Wheat	plastid	90.91	68.38
CDY52576	Canola	cytosol	72.73	66.67
Zm00001d039372_P002	Maize	endoplasmic reticulum, extracellular, mitochondrion, plastid	55.68	55.68
HORVU7Hr1G072420.4	Barley	cytosol, nucleus	78.41	53.08
TraesCS6B01G111500.1	Wheat	extracellular	54.55	49.48

Protein Annotations

EntrezGene:102606204	MapMan:16.4.2.5	Gene3D:2.30.30.100	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030529	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	UniProt:M1CEE9	PFAM:PF01423
EnsemblPlantsGene:PGSC0003DMG400025548	PGSC:PGSC0003DMG400025548	EnsemblPlants:PGSC0003DMT400065677	PANTHER:PTHR11193	SMART:SM00651	SUPFAM:SSF50182
UniParc:UPI0002957018	RefSeq:XP_006367615.1	InterPro:snRNP-E	:	:	:

Description

Small nuclear ribonucleoprotein polypeptide [Source:PGSC_GENE;Acc:PGSC0003DMG400025548]

Coordinates

chr5:-:5201163..5201661

Molecular Weight (calculated)

10315.9 Da

IEP (calculated)

10.544

GRAVY (calculated)

-0.248

Length

88 amino acids

Sequence
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRIIGFDEYM NLVLDDAEEV NVKKKTSKQL GRILLKSDNI TLMMNTGK

Best Arabidopsis Sequence Match ( AT4G30330.1 )
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKKTRKPL GRILLKGDNI TLMMNAGK

Arabidopsis Description

At4g30330 [Source:UniProtKB/TrEMBL;Acc:Q8LAK5]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.