Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- endoplasmic reticulum 1
- plastid 1
- extracellular 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023900_P001 | Maize | endoplasmic reticulum, extracellular | 65.91 | 86.57 |
| GSMUA_Achr10P... | Banana | cytosol | 17.05 | 60.0 |
| Bra024458.1-P | Field mustard | cytosol, mitochondrion | 56.82 | 58.14 |
| CDY13008 | Canola | cytosol, mitochondrion | 56.82 | 58.14 |
| CDY29245 | Canola | cytosol, mitochondrion | 56.82 | 58.14 |
| CDY59607 | Canola | cytosol, mitochondrion | 56.82 | 58.14 |
| CDY49311 | Canola | cytosol, mitochondrion | 56.82 | 56.82 |
| Zm00001d008916_P001 | Maize | mitochondrion | 56.82 | 56.82 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 56.82 | 56.82 |
| KRH02922 | Soybean | nucleus | 56.82 | 56.82 |
| AT2G18740.1 | Thale cress | cytosol, mitochondrion | 56.82 | 56.82 |
| Solyc06g072280.2.1 | Tomato | nucleus | 56.82 | 56.82 |
| PGSC0003DMT400069582 | Potato | cytosol, mitochondrion | 56.82 | 56.82 |
| TraesCSU01G017200.1 | Wheat | cytosol, mitochondrion | 54.55 | 55.81 |
| KRH53956 | Soybean | cytosol, mitochondrion | 55.68 | 55.68 |
| VIT_17s0000g03570.t01 | Wine grape | cytosol, mitochondrion | 55.68 | 55.68 |
| Solyc03g098470.2.1 | Tomato | cytosol, mitochondrion | 55.68 | 55.68 |
| PGSC0003DMT400065677 | Potato | cytosol, mitochondrion | 55.68 | 55.68 |
| Os02t0126700-01 | Rice | nucleus | 55.68 | 55.68 |
| KRH63981 | Soybean | nucleus | 55.68 | 55.68 |
| KRH18975 | Soybean | nucleus | 55.68 | 55.68 |
| GSMUA_Achr2P04990_001 | Banana | cytosol, mitochondrion | 55.68 | 55.68 |
| AT4G30330.1 | Thale cress | cytosol, mitochondrion | 55.68 | 55.68 |
| PGSC0003DMT400026313 | Potato | mitochondrion | 55.68 | 52.13 |
| TraesCS6A01G089100.2 | Wheat | plastid | 55.68 | 41.88 |
| CDY52576 | Canola | cytosol | 44.32 | 40.62 |
Protein Annotations
| EnsemblPlants:Zm00001d039372_P002 | EnsemblPlants:Zm00001d039372_T002 | EnsemblPlantsGene:Zm00001d039372 | EntrezGene:103649582 | Gene3D:2.30.30.100 | GO:GO:0000398 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019013 | GO:GO:0030529 | InterPro:snRNP-E |
| PANTHER:PTHR11193 | ProteinID:ONM28488.1 | UniParc:UPI000842D9AF | UniProt:A0A1D6MFZ6 | MapMan:16.4.2.5 | : |
Description
Small nuclear ribonucleoprotein family protein
Coordinates
chr3:+:2738002..2740841
Molecular Weight (calculated)
9851.3 Da
IEP (calculated)
10.970
GRAVY (calculated)
0.436
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRIIVSFLAL FLIQTAKLST SNSLLAPGNS LLAPVYANSC VVLGDKLS
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GFYSKETT
Arabidopsis Description
Putative small nuclear ribonucleoprotein E [Source:UniProtKB/TrEMBL;Acc:Q9ZV45]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.