Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
19621931
nucleus: 26035336 |
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0151400-01 | Rice | cytosol, nucleus | 70.45 | 96.88 |
| TraesCSU01G017200.1 | Wheat | cytosol, mitochondrion | 93.18 | 95.35 |
| AT2G18740.1 | Thale cress | cytosol, mitochondrion | 94.32 | 94.32 |
| GSMUA_Achr2P04990_001 | Banana | cytosol, mitochondrion | 94.32 | 94.32 |
| Bra024458.1-P | Field mustard | cytosol, mitochondrion | 92.05 | 94.19 |
| CDY29245 | Canola | cytosol, mitochondrion | 92.05 | 94.19 |
| CDY59607 | Canola | cytosol, mitochondrion | 92.05 | 94.19 |
| AT4G30330.1 | Thale cress | cytosol, mitochondrion | 93.18 | 93.18 |
| Solyc03g098470.2.1 | Tomato | cytosol, mitochondrion | 93.18 | 93.18 |
| KRH18975 | Soybean | nucleus | 93.18 | 93.18 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 93.18 | 93.18 |
| CDY49311 | Canola | cytosol, mitochondrion | 93.18 | 93.18 |
| CDY13008 | Canola | cytosol, mitochondrion | 90.91 | 93.02 |
| Solyc06g072280.2.1 | Tomato | nucleus | 92.05 | 92.05 |
| VIT_17s0000g03570.t01 | Wine grape | cytosol, mitochondrion | 92.05 | 92.05 |
| KRH53956 | Soybean | cytosol, mitochondrion | 92.05 | 92.05 |
| PGSC0003DMT400069582 | Potato | cytosol, mitochondrion | 92.05 | 92.05 |
| PGSC0003DMT400065677 | Potato | cytosol, mitochondrion | 92.05 | 92.05 |
| KRH63981 | Soybean | nucleus | 92.05 | 92.05 |
| KRH02922 | Soybean | nucleus | 92.05 | 92.05 |
| GSMUA_Achr10P... | Banana | cytosol | 26.14 | 92.0 |
| PGSC0003DMT400026313 | Potato | mitochondrion | 89.77 | 84.04 |
| TraesCS6A01G089100.2 | Wheat | plastid | 95.45 | 71.79 |
| CDY52576 | Canola | cytosol | 76.14 | 69.79 |
| Zm00001d023900_P001 | Maize | endoplasmic reticulum, extracellular | 52.27 | 68.66 |
| Zm00001d039372_P002 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plastid | 55.68 | 55.68 |
Protein Annotations
| MapMan:16.4.2.5 | Gene3D:2.30.30.100 | EntrezGene:4328158 | EMBL:AK063621 | ProteinID:BAD08019.1 | ProteinID:BAF07668.1 |
| ProteinID:BAS76772.1 | ProteinID:EEE56226.1 | GO:GO:0000387 | GO:GO:0000398 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005682 | GO:GO:0005685 | GO:GO:0005686 |
| GO:GO:0005687 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0046540 | GO:GO:0071011 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | EnsemblPlantsGene:Os02g0126700 | EnsemblPlants:Os02t0126700-01 |
| PFAM:PF01423 | PANTHER:PTHR11193 | UniProt:Q6Z2M5 | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI000023688B |
| RefSeq:XP_015625886.1 | InterPro:snRNP-E | : | : | : | : |
Description
Similar to Small nuclear ribonucleoprotein homolog. (Os02t0126700-01)
Coordinates
chr2:-:1399287..1401334
Molecular Weight (calculated)
10342.9 Da
IEP (calculated)
10.404
GRAVY (calculated)
-0.243
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRIIGFDEYM NLVLDEAEEI NIKKDTRKSL GRILLKGDNI TLMMNTGK
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GRILLKGDNI TLMMNTGK
Arabidopsis Description
Putative small nuclear ribonucleoprotein E [Source:UniProtKB/TrEMBL;Acc:Q9ZV45]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.