Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- endoplasmic reticulum 2
- extracellular 2
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039372_P002 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plastid | 86.57 | 65.91 |
| GSMUA_Achr10P... | Banana | cytosol | 22.39 | 60.0 |
| Bra024458.1-P | Field mustard | cytosol, mitochondrion | 68.66 | 53.49 |
| CDY13008 | Canola | cytosol, mitochondrion | 68.66 | 53.49 |
| CDY29245 | Canola | cytosol, mitochondrion | 68.66 | 53.49 |
| CDY59607 | Canola | cytosol, mitochondrion | 68.66 | 53.49 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 70.15 | 53.41 |
| TraesCSU01G017200.1 | Wheat | cytosol, mitochondrion | 67.16 | 52.33 |
| AT4G30330.1 | Thale cress | cytosol, mitochondrion | 68.66 | 52.27 |
| Zm00001d008916_P001 | Maize | mitochondrion | 68.66 | 52.27 |
| Solyc03g098470.2.1 | Tomato | cytosol, mitochondrion | 68.66 | 52.27 |
| PGSC0003DMT400065677 | Potato | cytosol, mitochondrion | 68.66 | 52.27 |
| Os02t0126700-01 | Rice | nucleus | 68.66 | 52.27 |
| KRH02922 | Soybean | nucleus | 68.66 | 52.27 |
| GSMUA_Achr2P04990_001 | Banana | cytosol, mitochondrion | 68.66 | 52.27 |
| CDY49311 | Canola | cytosol, mitochondrion | 68.66 | 52.27 |
| AT2G18740.1 | Thale cress | cytosol, mitochondrion | 68.66 | 52.27 |
| KRH53956 | Soybean | cytosol, mitochondrion | 67.16 | 51.14 |
| KRH63981 | Soybean | nucleus | 67.16 | 51.14 |
| KRH18975 | Soybean | nucleus | 67.16 | 51.14 |
| PGSC0003DMT400069582 | Potato | cytosol, mitochondrion | 67.16 | 51.14 |
| Solyc06g072280.2.1 | Tomato | nucleus | 67.16 | 51.14 |
| VIT_17s0000g03570.t01 | Wine grape | cytosol, mitochondrion | 67.16 | 51.14 |
| PGSC0003DMT400026313 | Potato | mitochondrion | 68.66 | 48.94 |
| TraesCS6A01G089100.2 | Wheat | plastid | 67.16 | 38.46 |
| CDY52576 | Canola | cytosol | 52.24 | 36.46 |
Protein Annotations
| MapMan:16.4.2.5 | Gene3D:2.30.30.100 | UniProt:A0A1D6IWR3 | ProteinID:AQK40360.1 | GO:GO:0000398 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019013 | GO:GO:0030529 |
| PANTHER:PTHR11193 | TMHMM:TMhelix | UniParc:UPI000844FBB1 | EnsemblPlantsGene:Zm00001d023900 | EnsemblPlants:Zm00001d023900_P001 | EnsemblPlants:Zm00001d023900_T001 |
| InterPro:snRNP-E | : | : | : | : | : |
Description
Small nuclear ribonucleoprotein family protein
Coordinates
chr10:+:27174146..27174732
Molecular Weight (calculated)
7785.9 Da
IEP (calculated)
10.835
GRAVY (calculated)
0.501
Length
67 amino acids
Sequence
(BLAST)
(BLAST)
1: MASTKVQRIM TQPINLIFRF LQSKACIQIW LFEQKDLRIE GRIIVSFLAL FLVQTAKLST SNYLLVP
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKKTRKPL GRILLKGDNI TLMMNAGK
Arabidopsis Description
At4g30330 [Source:UniProtKB/TrEMBL;Acc:Q8LAK5]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.