CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53956	Soybean	cytosol, mitochondrion	100.0	100.0
KRH18975	Soybean	nucleus	98.86	98.86
KRH02922	Soybean	nucleus	97.73	97.73
Solyc06g072280.2.1	Tomato	nucleus	95.45	95.45
Solyc03g098470.2.1	Tomato	cytosol, mitochondrion	95.45	95.45
PGSC0003DMT400069582	Potato	cytosol, mitochondrion	95.45	95.45
VIT_17s0000g03570.t01	Wine grape	cytosol, mitochondrion	94.32	94.32
EES00066	Sorghum	cytosol, mitochondrion	94.32	94.32
GSMUA_Achr2P04990_001	Banana	cytosol, mitochondrion	94.32	94.32
PGSC0003DMT400065677	Potato	cytosol, mitochondrion	94.32	94.32
Os08t0151400-01	Rice	cytosol, nucleus	68.18	93.75
Zm00001d008916_P001	Maize	mitochondrion	92.05	92.05
Os02t0126700-01	Rice	nucleus	92.05	92.05
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	92.05	92.05
GSMUA_Achr10P...	Banana	cytosol	26.14	92.0
TraesCS7A01G304400.1	Wheat	cytosol, mitochondrion	90.91	90.91
TraesCS7D01G299900.1	Wheat	cytosol, mitochondrion	90.91	90.91
AT4G30330.1	Thale cress	cytosol, mitochondrion	90.91	90.91
AT2G18740.1	Thale cress	cytosol, mitochondrion	90.91	90.91
CDY59607	Canola	cytosol, mitochondrion	88.64	90.7
CDY29245	Canola	cytosol, mitochondrion	88.64	90.7
Bra024458.1-P	Field mustard	cytosol, mitochondrion	88.64	90.7
CDY49311	Canola	cytosol, mitochondrion	89.77	89.77
CDY13008	Canola	cytosol, mitochondrion	87.5	89.53
TraesCSU01G017200.1	Wheat	cytosol, mitochondrion	87.5	89.53
PGSC0003DMT400026313	Potato	mitochondrion	92.05	86.17
TraesCS6A01G089100.2	Wheat	plastid	90.91	68.38
Zm00001d023900_P001	Maize	endoplasmic reticulum, extracellular	51.14	67.16
CDY52576	Canola	cytosol	72.73	66.67
Zm00001d039372_P002	Maize	endoplasmic reticulum, extracellular, mitochondrion, plastid	55.68	55.68
HORVU7Hr1G072420.4	Barley	cytosol, nucleus	78.41	53.08
TraesCS6B01G111500.1	Wheat	extracellular	54.55	49.48

Protein Annotations

EntrezGene:100500256	EntrezGene:100816107	MapMan:16.4.2.5	Gene3D:2.30.30.100	EMBL:ACUP02002734	EMBL:ACUP02003491
EnsemblPlantsGene:GLYMA_04G208600	GO:GO:0000387	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0005682	GO:GO:0005685	GO:GO:0005686	GO:GO:0005687
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0030529
GO:GO:0046540	GO:GO:0071011	UniProt:I1KBP3	ProteinID:KRH53956.1	EnsemblPlants:KRH63981	ProteinID:KRH63981
ProteinID:KRH63981.1	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	PFAM:PF01423	PANTHER:PTHR11193	SMART:SM00651
SUPFAM:SSF50182	UniParc:UPI00023397F1	InterPro:snRNP-E	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:48100720..48102242

Molecular Weight (calculated)

10299.9 Da

IEP (calculated)

10.720

GRAVY (calculated)

-0.258

Length

88 amino acids

Sequence
(BLAST)

1: MASTKVQRVM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRIIGFDEYM NLVLDDAEEV NVKKKSRKTL GRILLKGDNI TLMMNTGK

Best Arabidopsis Sequence Match ( AT4G30330.1 )
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKKTRKPL GRILLKGDNI TLMMNAGK

Arabidopsis Description

At4g30330 [Source:UniProtKB/TrEMBL;Acc:Q8LAK5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.