Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G304400.1 | Wheat | cytosol, mitochondrion | 74.36 | 98.86 |
| TraesCSU01G017200.1 | Wheat | cytosol, mitochondrion | 70.94 | 96.51 |
| Os02t0126700-01 | Rice | nucleus | 71.79 | 95.45 |
| GSMUA_Achr2P04990_001 | Banana | cytosol, mitochondrion | 70.09 | 93.18 |
| Solyc06g072280.2.1 | Tomato | nucleus | 70.09 | 93.18 |
| PGSC0003DMT400069582 | Potato | cytosol, mitochondrion | 70.09 | 93.18 |
| VIT_17s0000g03570.t01 | Wine grape | cytosol, mitochondrion | 69.23 | 92.05 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 69.23 | 92.05 |
| KRH18975 | Soybean | nucleus | 69.23 | 92.05 |
| Solyc03g098470.2.1 | Tomato | cytosol, mitochondrion | 69.23 | 92.05 |
| AT2G18740.1 | Thale cress | cytosol, mitochondrion | 69.23 | 92.05 |
| CDY59607 | Canola | cytosol, mitochondrion | 67.52 | 91.86 |
| CDY29245 | Canola | cytosol, mitochondrion | 67.52 | 91.86 |
| Bra024458.1-P | Field mustard | cytosol, mitochondrion | 67.52 | 91.86 |
| CDY49311 | Canola | cytosol, mitochondrion | 68.38 | 90.91 |
| KRH02922 | Soybean | nucleus | 68.38 | 90.91 |
| KRH53956 | Soybean | cytosol, mitochondrion | 68.38 | 90.91 |
| KRH63981 | Soybean | nucleus | 68.38 | 90.91 |
| PGSC0003DMT400065677 | Potato | cytosol, mitochondrion | 68.38 | 90.91 |
| CDY13008 | Canola | cytosol, mitochondrion | 66.67 | 90.7 |
| AT4G30330.1 | Thale cress | cytosol, mitochondrion | 67.52 | 89.77 |
| GSMUA_Achr10P... | Banana | cytosol | 18.8 | 88.0 |
| PGSC0003DMT400026313 | Potato | mitochondrion | 66.67 | 82.98 |
| CDY52576 | Canola | cytosol | 55.56 | 67.71 |
| Zm00001d023900_P001 | Maize | endoplasmic reticulum, extracellular | 38.46 | 67.16 |
| Zm00001d039372_P002 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plastid | 41.88 | 55.68 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G089100.2 | EnsemblPlantsGene:TraesCS6A01G089100 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:snRNP-E | PFAM:PF01423 | SEG:seg |
| SMART:SM00651 | SUPFAM:SSF50182 | TIGR:cd01718 | MapMan:16.4.2.5 | : | : |
Description
No Description!
Coordinates
chr6A:+:57688193..57690587
Molecular Weight (calculated)
13454.6 Da
IEP (calculated)
10.982
GRAVY (calculated)
-0.306
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTKVQRIM TQPINLIFRF LQSVRPSLSP PPPFFPRARA SVSLTPFPPP EQKARIQIWL FEQKDARIEG RIIGFDEYMN LVLEDAEEIN IKKNTRKSLG
101: RILLKGDNIT LMMNTGK
101: RILLKGDNIT LMMNTGK
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GRILLKGDNI TLMMNTGK
Arabidopsis Description
Putative small nuclear ribonucleoprotein E [Source:UniProtKB/TrEMBL;Acc:Q9ZV45]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.