Factsheet for Solyc06g072280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069582	Potato	cytosol, mitochondrion	100.0	100.0
Solyc03g098470.2.1	Tomato	cytosol, mitochondrion	95.45	95.45
KRH63981	Soybean	nucleus	95.45	95.45
KRH53956	Soybean	cytosol, mitochondrion	95.45	95.45
EES00066	Sorghum	cytosol, mitochondrion	95.45	95.45
KRH18975	Soybean	nucleus	94.32	94.32
VIT_17s0000g03570.t01	Wine grape	cytosol, mitochondrion	94.32	94.32
GSMUA_Achr2P04990_001	Banana	cytosol, mitochondrion	93.18	93.18
TraesCS7A01G304400.1	Wheat	cytosol, mitochondrion	93.18	93.18
TraesCS7D01G299900.1	Wheat	cytosol, mitochondrion	93.18	93.18
KRH02922	Soybean	nucleus	93.18	93.18
Zm00001d008916_P001	Maize	mitochondrion	93.18	93.18
Os08t0151400-01	Rice	cytosol, nucleus	67.05	92.19
CDY49311	Canola	cytosol, mitochondrion	92.05	92.05
Os02t0126700-01	Rice	nucleus	92.05	92.05
AT2G18740.1	Thale cress	cytosol, mitochondrion	92.05	92.05
CDY59607	Canola	cytosol, mitochondrion	89.77	91.86
CDY29245	Canola	cytosol, mitochondrion	89.77	91.86
CDY13008	Canola	cytosol, mitochondrion	89.77	91.86
Bra024458.1-P	Field mustard	cytosol, mitochondrion	89.77	91.86
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	90.91	90.91
TraesCSU01G017200.1	Wheat	cytosol, mitochondrion	88.64	90.7
AT4G30330.1	Thale cress	cytosol, mitochondrion	89.77	89.77
GSMUA_Achr10P...	Banana	cytosol	25.0	88.0
TraesCS6A01G089100.2	Wheat	plastid	93.18	70.09
CDY52576	Canola	cytosol	73.86	67.71
Zm00001d023900_P001	Maize	endoplasmic reticulum, extracellular	51.14	67.16
Zm00001d039372_P002	Maize	endoplasmic reticulum, extracellular, mitochondrion, plastid	56.82	56.82
HORVU7Hr1G072420.4	Barley	cytosol, nucleus	80.68	54.62
TraesCS6B01G111500.1	Wheat	extracellular	56.82	51.55

Protein Annotations

MapMan:16.4.2.5	Gene3D:2.30.30.100	GO:GO:0000387	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005682	GO:GO:0005685	GO:GO:0005686
GO:GO:0005687	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0030529	GO:GO:0046540	GO:GO:0071011	UniProt:K4C8U8	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf
PFAM:PF01423	PANTHER:PTHR11193	SMART:SM00651	SUPFAM:SSF50182	EnsemblPlantsGene:Solyc06g072280.2	EnsemblPlants:Solyc06g072280.2.1
UniParc:UPI000276578B	InterPro:snRNP-E	:	:	:	:

Description

No Description!

Coordinates

chr6:+:44564152..44566407

Molecular Weight (calculated)

10341.8 Da

IEP (calculated)

10.614

GRAVY (calculated)

-0.365

Length

88 amino acids

Sequence
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDQRIE GRIIGFDEYM NLVLDDAEEV NVKKNSRKQL GRILLKGDNI TLMMNTGK

Best Arabidopsis Sequence Match ( AT2G18740.1 )
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GRILLKGDNI TLMMNTGK

Arabidopsis Description

Putative small nuclear ribonucleoprotein E [Source:UniProtKB/TrEMBL;Acc:Q9ZV45]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.