CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13008	Canola	cytosol, mitochondrion	97.73	100.0
AT2G18740.1	Thale cress	cytosol, mitochondrion	97.73	97.73
CDY29245	Canola	cytosol, mitochondrion	95.45	97.67
CDY59607	Canola	cytosol, mitochondrion	95.45	97.67
Os02t0126700-01	Rice	nucleus	93.18	93.18
EES00066	Sorghum	cytosol, mitochondrion	92.05	92.05
Solyc06g072280.2.1	Tomato	nucleus	92.05	92.05
Solyc03g098470.2.1	Tomato	cytosol, mitochondrion	92.05	92.05
GSMUA_Achr2P04990_001	Banana	cytosol, mitochondrion	92.05	92.05
PGSC0003DMT400069582	Potato	cytosol, mitochondrion	92.05	92.05
KRH02922	Soybean	nucleus	92.05	92.05
TraesCS7A01G304400.1	Wheat	cytosol, mitochondrion	90.91	90.91
TraesCS7D01G299900.1	Wheat	cytosol, mitochondrion	90.91	90.91
PGSC0003DMT400065677	Potato	cytosol, mitochondrion	90.91	90.91
KRH18975	Soybean	nucleus	90.91	90.91
VIT_17s0000g03570.t01	Wine grape	cytosol, mitochondrion	90.91	90.91
KRH63981	Soybean	nucleus	89.77	89.77
KRH53956	Soybean	cytosol, mitochondrion	89.77	89.77
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	89.77	89.77
Zm00001d008916_P001	Maize	mitochondrion	89.77	89.77
TraesCSU01G017200.1	Wheat	cytosol, mitochondrion	86.36	88.37
GSMUA_Achr10P...	Banana	cytosol	25.0	88.0
Os08t0151400-01	Rice	cytosol, nucleus	63.64	87.5
PGSC0003DMT400026313	Potato	mitochondrion	88.64	82.98
CDY52576	Canola	cytosol	78.41	71.88
Zm00001d023900_P001	Maize	endoplasmic reticulum, extracellular	52.27	68.66
TraesCS6A01G089100.2	Wheat	plastid	90.91	68.38
Zm00001d039372_P002	Maize	endoplasmic reticulum, extracellular, mitochondrion, plastid	56.82	56.82
HORVU7Hr1G072420.4	Barley	cytosol, nucleus	78.41	53.08
TraesCS6B01G111500.1	Wheat	extracellular	54.55	49.48

Protein Annotations

MapMan:16.4.2.5	Gene3D:2.30.30.100	GO:A0A078IH41	UniProt:A0A078IH41	EnsemblPlants:CDY49311	ProteinID:CDY49311
ProteinID:CDY49311.1	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529
EnsemblPlantsGene:GSBRNA2T00092736001	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	PFAM:PF01423	PANTHER:PTHR11193	SMART:SM00651
SUPFAM:SSF50182	UniParc:UPI0004EE167D	InterPro:snRNP-E	:	:	:

Description

BnaA07g01560DBnaA07g01560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IH41]

Coordinates

chrLK032824:-:63697..65550

Molecular Weight (calculated)

10302.8 Da

IEP (calculated)

10.152

GRAVY (calculated)

-0.294

Length

88 amino acids

Sequence
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKQL GEILLKGDNI TLMMNTGK

Best Arabidopsis Sequence Match ( AT2G18740.1 )
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GRILLKGDNI TLMMNTGK

Arabidopsis Description

Putative small nuclear ribonucleoprotein E [Source:UniProtKB/TrEMBL;Acc:Q9ZV45]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.