Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G204700.1 | Wheat | unclear | 55.67 | 61.36 |
| VIT_17s0000g03570.t01 | Wine grape | cytosol, mitochondrion | 51.55 | 56.82 |
| Solyc06g072280.2.1 | Tomato | nucleus | 51.55 | 56.82 |
| PGSC0003DMT400069582 | Potato | cytosol, mitochondrion | 51.55 | 56.82 |
| Solyc03g098470.2.1 | Tomato | cytosol, mitochondrion | 50.52 | 55.68 |
| AT2G18740.1 | Thale cress | cytosol, mitochondrion | 50.52 | 55.68 |
| Bra024458.1-P | Field mustard | cytosol, mitochondrion | 48.45 | 54.65 |
| CDY29245 | Canola | cytosol, mitochondrion | 48.45 | 54.65 |
| CDY59607 | Canola | cytosol, mitochondrion | 48.45 | 54.65 |
| KRH18975 | Soybean | nucleus | 49.48 | 54.55 |
| PGSC0003DMT400065677 | Potato | cytosol, mitochondrion | 49.48 | 54.55 |
| KRH63981 | Soybean | nucleus | 49.48 | 54.55 |
| KRH53956 | Soybean | cytosol, mitochondrion | 49.48 | 54.55 |
| CDY49311 | Canola | cytosol, mitochondrion | 49.48 | 54.55 |
| CDY13008 | Canola | cytosol, mitochondrion | 47.42 | 53.49 |
| KRH02922 | Soybean | nucleus | 48.45 | 53.41 |
| AT4G30330.1 | Thale cress | cytosol, mitochondrion | 48.45 | 53.41 |
| PGSC0003DMT400026313 | Potato | mitochondrion | 47.42 | 48.94 |
| CDY52576 | Canola | cytosol | 46.39 | 46.88 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G111500.1 | EnsemblPlantsGene:TraesCS6B01G111500 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:snRNP-E | PANTHER:PTHR11193 | PFAM:PF01423 |
| SMART:SM00651 | SUPFAM:SSF50182 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr6B:+:93430964..93434263
Molecular Weight (calculated)
11484.3 Da
IEP (calculated)
5.133
GRAVY (calculated)
-0.069
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MLLVPPSMVM NIICTPILIY HELNFRFENF MEMVWEVQVL WSVMTEERRL QARGFDEYMN LVLEDAEEIN TKKNTRKSLG RILLKGDNIT LMMNTGK
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GRILLKGDNI TLMMNTGK
Arabidopsis Description
Putative small nuclear ribonucleoprotein E [Source:UniProtKB/TrEMBL;Acc:Q9ZV45]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.