Factsheet for Bra024458.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29245	Canola	cytosol, mitochondrion	100.0	100.0
CDY59607	Canola	cytosol, mitochondrion	100.0	100.0
AT2G18740.1	Thale cress	cytosol, mitochondrion	100.0	97.73
GSMUA_Achr2P04990_001	Banana	cytosol, mitochondrion	94.19	92.05
Os02t0126700-01	Rice	nucleus	94.19	92.05
EES00066	Sorghum	cytosol, mitochondrion	93.02	90.91
KRH02922	Soybean	nucleus	93.02	90.91
TraesCS7A01G304400.1	Wheat	cytosol, mitochondrion	91.86	89.77
TraesCS7D01G299900.1	Wheat	cytosol, mitochondrion	91.86	89.77
Solyc06g072280.2.1	Tomato	nucleus	91.86	89.77
Solyc03g098470.2.1	Tomato	cytosol, mitochondrion	91.86	89.77
PGSC0003DMT400069582	Potato	cytosol, mitochondrion	91.86	89.77
KRH18975	Soybean	nucleus	91.86	89.77
VIT_17s0000g03570.t01	Wine grape	cytosol, mitochondrion	91.86	89.77
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	91.86	89.77
TraesCSU01G017200.1	Wheat	cytosol, mitochondrion	89.53	89.53
KRH63981	Soybean	nucleus	90.7	88.64
KRH53956	Soybean	cytosol, mitochondrion	90.7	88.64
PGSC0003DMT400065677	Potato	cytosol, mitochondrion	90.7	88.64
Zm00001d008916_P001	Maize	mitochondrion	90.7	88.64
GSMUA_Achr10P...	Banana	cytosol	25.58	88.0
Os08t0151400-01	Rice	cytosol, nucleus	63.95	85.94
PGSC0003DMT400026313	Potato	mitochondrion	90.7	82.98
CDY52576	Canola	cytosol	80.23	71.88
Zm00001d023900_P001	Maize	endoplasmic reticulum, extracellular	53.49	68.66
TraesCS6A01G089100.2	Wheat	plastid	91.86	67.52
Zm00001d039372_P002	Maize	endoplasmic reticulum, extracellular, mitochondrion, plastid	58.14	56.82
HORVU7Hr1G072420.4	Barley	cytosol, nucleus	79.07	52.31
TraesCS6B01G111500.1	Wheat	extracellular	54.65	48.45

Protein Annotations

MapMan:16.4.2.5	Gene3D:2.30.30.100	EnsemblPlantsGene:Bra024458	EnsemblPlants:Bra024458.1	EnsemblPlants:Bra024458.1-P	GO:GO:0000398
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529
InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	UniProt:M4E6Q4	PFAM:PF01423	PANTHER:PTHR11193	SMART:SM00651
SUPFAM:SSF50182	UniParc:UPI000253EF25	InterPro:snRNP-E	:	:	:

Description

AT2G18740 (E=2e-043) | small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative

Coordinates

chrA06:-:15899669..15901401

Molecular Weight (calculated)

10113.6 Da

IEP (calculated)

10.474

GRAVY (calculated)

-0.241

Length

86 amino acids

Sequence
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GRILLKGDNI TLMMNT

Best Arabidopsis Sequence Match ( AT2G18740.1 )
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GRILLKGDNI TLMMNTGK

Arabidopsis Description

Putative small nuclear ribonucleoprotein E [Source:UniProtKB/TrEMBL;Acc:Q9ZV45]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.