Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024458.1-P | Field mustard | cytosol, mitochondrion | 97.73 | 100.0 |
| CDY29245 | Canola | cytosol, mitochondrion | 97.73 | 100.0 |
| CDY59607 | Canola | cytosol, mitochondrion | 97.73 | 100.0 |
| CDY49311 | Canola | cytosol, mitochondrion | 97.73 | 97.73 |
| AT4G30330.1 | Thale cress | cytosol, mitochondrion | 97.73 | 97.73 |
| CDY13008 | Canola | cytosol, mitochondrion | 95.45 | 97.67 |
| Os02t0126700-01 | Rice | nucleus | 94.32 | 94.32 |
| GSMUA_Achr2P04990_001 | Banana | cytosol, mitochondrion | 94.32 | 94.32 |
| EES00066 | Sorghum | cytosol, mitochondrion | 93.18 | 93.18 |
| KRH02922 | Soybean | nucleus | 93.18 | 93.18 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 92.05 | 92.05 |
| VIT_17s0000g03570.t01 | Wine grape | cytosol, mitochondrion | 92.05 | 92.05 |
| TraesCS7D01G299900.1 | Wheat | cytosol, mitochondrion | 92.05 | 92.05 |
| TraesCS7A01G304400.1 | Wheat | cytosol, mitochondrion | 92.05 | 92.05 |
| Solyc06g072280.2.1 | Tomato | nucleus | 92.05 | 92.05 |
| Solyc03g098470.2.1 | Tomato | cytosol, mitochondrion | 92.05 | 92.05 |
| PGSC0003DMT400069582 | Potato | cytosol, mitochondrion | 92.05 | 92.05 |
| KRH18975 | Soybean | nucleus | 92.05 | 92.05 |
| PGSC0003DMT400065677 | Potato | cytosol, mitochondrion | 90.91 | 90.91 |
| KRH63981 | Soybean | nucleus | 90.91 | 90.91 |
| KRH53956 | Soybean | cytosol, mitochondrion | 90.91 | 90.91 |
| Zm00001d008916_P001 | Maize | mitochondrion | 90.91 | 90.91 |
| TraesCSU01G017200.1 | Wheat | cytosol, mitochondrion | 87.5 | 89.53 |
| Os08t0151400-01 | Rice | cytosol, nucleus | 64.77 | 89.06 |
| GSMUA_Achr10P... | Banana | cytosol | 25.0 | 88.0 |
| PGSC0003DMT400026313 | Potato | mitochondrion | 88.64 | 82.98 |
| CDY52576 | Canola | cytosol | 80.68 | 73.96 |
| TraesCS6A01G089100.2 | Wheat | plastid | 92.05 | 69.23 |
| Zm00001d023900_P001 | Maize | endoplasmic reticulum, extracellular | 52.27 | 68.66 |
| Zm00001d039372_P002 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plastid | 56.82 | 56.82 |
| HORVU7Hr1G072420.4 | Barley | cytosol, nucleus | 79.55 | 53.85 |
| TraesCS6B01G111500.1 | Wheat | extracellular | 55.68 | 50.52 |
Protein Annotations
| MapMan:16.4.2.5 | Gene3D:2.30.30.100 | EntrezGene:816389 | ProteinID:AAD08943.1 | ProteinID:AEC06800.1 | EMBL:AK118809 |
| ArrayExpress:AT2G18740 | EnsemblPlantsGene:AT2G18740 | RefSeq:AT2G18740 | TAIR:AT2G18740 | RefSeq:AT2G18740-TAIR-G | EnsemblPlants:AT2G18740.1 |
| TAIR:AT2G18740.1 | EMBL:AY086369 | Unigene:At.39949 | EMBL:BT005662 | GO:GO:0000387 | GO:GO:0000398 |
| GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 |
| GO:GO:0005682 | GO:GO:0005685 | GO:GO:0005686 | GO:GO:0005687 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019013 |
| GO:GO:0030529 | GO:GO:0046540 | GO:GO:0071011 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | RefSeq:NP_179464.1 |
| PFAM:PF01423 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR11193 | UniProt:Q9ZV45 | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI000000C6ED |
| InterPro:snRNP-E | : | : | : | : | : |
Description
Putative small nuclear ribonucleoprotein E [Source:UniProtKB/TrEMBL;Acc:Q9ZV45]
Coordinates
chr2:+:8123221..8125078
Molecular Weight (calculated)
10298.8 Da
IEP (calculated)
10.614
GRAVY (calculated)
-0.284
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GRILLKGDNI TLMMNTGK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.