Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
19621931
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 35.94 | 92.0 |
| EES00066 | Sorghum | cytosol, mitochondrion | 98.44 | 71.59 |
| Os02t0126700-01 | Rice | nucleus | 96.88 | 70.45 |
| Zm00001d008916_P001 | Maize | mitochondrion | 95.31 | 69.32 |
| VIT_17s0000g03570.t01 | Wine grape | cytosol, mitochondrion | 93.75 | 68.18 |
| TraesCS7D01G299900.1 | Wheat | cytosol, mitochondrion | 93.75 | 68.18 |
| TraesCS7B01G204700.1 | Wheat | unclear | 93.75 | 68.18 |
| TraesCS7A01G304400.1 | Wheat | cytosol, mitochondrion | 93.75 | 68.18 |
| Solyc03g098470.2.1 | Tomato | cytosol, mitochondrion | 93.75 | 68.18 |
| KRH63981 | Soybean | nucleus | 93.75 | 68.18 |
| KRH53956 | Soybean | cytosol, mitochondrion | 93.75 | 68.18 |
| KRH18975 | Soybean | nucleus | 92.19 | 67.05 |
| Solyc06g072280.2.1 | Tomato | nucleus | 92.19 | 67.05 |
| PGSC0003DMT400069582 | Potato | cytosol, mitochondrion | 92.19 | 67.05 |
| PGSC0003DMT400065677 | Potato | cytosol, mitochondrion | 92.19 | 67.05 |
| GSMUA_Achr2P04990_001 | Banana | cytosol, mitochondrion | 92.19 | 67.05 |
| KRH02922 | Soybean | nucleus | 90.62 | 65.91 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 90.62 | 65.91 |
| AT2G18740.1 | Thale cress | cytosol, mitochondrion | 89.06 | 64.77 |
| CDY59607 | Canola | cytosol, mitochondrion | 85.94 | 63.95 |
| CDY29245 | Canola | cytosol, mitochondrion | 85.94 | 63.95 |
| Bra024458.1-P | Field mustard | cytosol, mitochondrion | 85.94 | 63.95 |
| CDY49311 | Canola | cytosol, mitochondrion | 87.5 | 63.64 |
| AT4G30330.1 | Thale cress | cytosol, mitochondrion | 87.5 | 63.64 |
| CDY13008 | Canola | cytosol, mitochondrion | 84.38 | 62.79 |
| PGSC0003DMT400026313 | Potato | mitochondrion | 89.06 | 60.64 |
| HORVU7Hr1G072420.4 | Barley | cytosol, nucleus | 93.75 | 46.15 |
| CDY52576 | Canola | cytosol | 65.62 | 43.75 |
Protein Annotations
| MapMan:16.4.2.5 | Gene3D:2.30.30.100 | ProteinID:BAF22912.1 | ProteinID:BAT03843.1 | GO:GO:0000387 | GO:GO:0000398 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005682 |
| GO:GO:0005685 | GO:GO:0005686 | GO:GO:0005687 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046540 | GO:GO:0071011 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf |
| EnsemblPlantsGene:Os08g0151400 | EnsemblPlants:Os08t0151400-01 | PFAM:PF01423 | PANTHER:PTHR11193 | UniProt:Q0J803 | SMART:SM00651 |
| SUPFAM:SSF50182 | UniParc:UPI0000DD93C0 | InterPro:snRNP-E | : | : | : |
Description
Similar to Small nuclear ribonucleoprotein homolog. (Os08t0151400-01)
Coordinates
chr8:+:2965682..2967788
Molecular Weight (calculated)
7481.2 Da
IEP (calculated)
6.818
GRAVY (calculated)
-0.356
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: ARIQIWLFEQ KDLRIEGRII GFDEYMNLVL DDAEEINVKK DTRKSLGRIL LKGDNITLMM NTGK
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GRILLKGDNI TLMMNTGK
Arabidopsis Description
Putative small nuclear ribonucleoprotein E [Source:UniProtKB/TrEMBL;Acc:Q9ZV45]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.