Factsheet for TraesCS7B01G204700.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G304400.1	Wheat	cytosol, mitochondrion	100.0	100.0
TraesCS7D01G299900.1	Wheat	cytosol, mitochondrion	100.0	100.0
EES00066	Sorghum	cytosol, mitochondrion	96.59	96.59
Zm00001d008916_P001	Maize	mitochondrion	96.59	96.59
Os08t0151400-01	Rice	cytosol, nucleus	68.18	93.75
GSMUA_Achr2P04990_001	Banana	cytosol, mitochondrion	93.18	93.18
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	92.05	92.05
GSMUA_Achr10P...	Banana	cytosol	25.0	88.0
HORVU7Hr1G072420.4	Barley	cytosol, nucleus	87.5	59.23
TraesCS6B01G111500.1	Wheat	extracellular	61.36	55.67

Protein Annotations

EnsemblPlants:TraesCS7B01G204700.1	EnsemblPlantsGene:TraesCS7B01G204700	Gene3D:2.30.30.100	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:snRNP-E	PANTHER:PTHR11193	PFAM:PF01423
SMART:SM00651	SUPFAM:SSF50182	TIGR:cd01718	MapMan:16.4.2.5	:	:

Description

No Description!

Coordinates

chr7B:-:374983844..374986498

Molecular Weight (calculated)

10360.0 Da

IEP (calculated)

10.614

GRAVY (calculated)

-0.265

Length

88 amino acids

Sequence
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDMRIE GRIIGFDEYM NLVLEDAEEI NIKKNTRKSL GRILLKGDNI TLMMNTGK

Best Arabidopsis Sequence Match ( AT2G18740.1 )
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GRILLKGDNI TLMMNTGK

Arabidopsis Description

Putative small nuclear ribonucleoprotein E [Source:UniProtKB/TrEMBL;Acc:Q9ZV45]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.