Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0151400-01 | Rice | cytosol, nucleus | 92.0 | 35.94 |
| Zm00001d008916_P001 | Maize | mitochondrion | 92.0 | 26.14 |
| Solyc03g098470.2.1 | Tomato | cytosol, mitochondrion | 92.0 | 26.14 |
| PGSC0003DMT400065677 | Potato | cytosol, mitochondrion | 92.0 | 26.14 |
| Os02t0126700-01 | Rice | nucleus | 92.0 | 26.14 |
| KRH63981 | Soybean | nucleus | 92.0 | 26.14 |
| KRH53956 | Soybean | cytosol, mitochondrion | 92.0 | 26.14 |
| KRH18975 | Soybean | nucleus | 92.0 | 26.14 |
| KRH02922 | Soybean | nucleus | 92.0 | 26.14 |
| GSMUA_Achr2P04990_001 | Banana | cytosol, mitochondrion | 92.0 | 26.14 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 92.0 | 26.14 |
| EES00066 | Sorghum | cytosol, mitochondrion | 92.0 | 26.14 |
| VIT_17s0000g03570.t01 | Wine grape | cytosol, mitochondrion | 92.0 | 26.14 |
| CDY59607 | Canola | cytosol, mitochondrion | 88.0 | 25.58 |
| CDY29245 | Canola | cytosol, mitochondrion | 88.0 | 25.58 |
| CDY13008 | Canola | cytosol, mitochondrion | 88.0 | 25.58 |
| Bra024458.1-P | Field mustard | cytosol, mitochondrion | 88.0 | 25.58 |
| TraesCS7B01G204700.1 | Wheat | unclear | 88.0 | 25.0 |
| TraesCS7D01G299900.1 | Wheat | cytosol, mitochondrion | 88.0 | 25.0 |
| TraesCS7A01G304400.1 | Wheat | cytosol, mitochondrion | 88.0 | 25.0 |
| Solyc06g072280.2.1 | Tomato | nucleus | 88.0 | 25.0 |
| AT4G30330.1 | Thale cress | cytosol, mitochondrion | 88.0 | 25.0 |
| PGSC0003DMT400069582 | Potato | cytosol, mitochondrion | 88.0 | 25.0 |
| CDY49311 | Canola | cytosol, mitochondrion | 88.0 | 25.0 |
| AT2G18740.1 | Thale cress | cytosol, mitochondrion | 88.0 | 25.0 |
| PGSC0003DMT400026313 | Potato | mitochondrion | 92.0 | 24.47 |
| TraesCSU01G017200.1 | Wheat | cytosol, mitochondrion | 84.0 | 24.42 |
| Zm00001d023900_P001 | Maize | endoplasmic reticulum, extracellular | 60.0 | 22.39 |
| TraesCS6A01G089100.2 | Wheat | plastid | 88.0 | 18.8 |
| Zm00001d039372_P002 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plastid | 60.0 | 17.05 |
| HORVU7Hr1G072420.4 | Barley | cytosol, nucleus | 88.0 | 16.92 |
| CDY52576 | Canola | cytosol | 32.0 | 8.33 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P06170_001 | EnsemblPlants:GSMUA_Achr10T06170_001 | EnsemblPlantsGene:GSMUA_Achr10G06170_001 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:snRNP-E | PANTHER:PTHR11193 |
| PFAM:PF01423 | SUPFAM:SSF50182 | UniParc:UPI000296D9CE | UniProt:M0RFU4 | MapMan:16.4.2.5 | : |
Description
Small nuclear ribonucleoprotein E [Source:GMGC_GENE;Acc:GSMUA_Achr10G06170_001]
Coordinates
chr10:+:16619644..16620647
Molecular Weight (calculated)
3132.8 Da
IEP (calculated)
4.265
GRAVY (calculated)
-0.240
Length
25 amino acids
Sequence
(BLAST)
(BLAST)
1: MWLYEQKDLR IEGRIIGFDE YMNLV
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GFYSKETT
Arabidopsis Description
Putative small nuclear ribonucleoprotein E [Source:UniProtKB/TrEMBL;Acc:Q9ZV45]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.