Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G304400.1 | Wheat | cytosol, mitochondrion | 100.0 | 100.0 |
| TraesCS7B01G204700.1 | Wheat | unclear | 100.0 | 100.0 |
| Zm00001d008916_P001 | Maize | mitochondrion | 96.59 | 96.59 |
| EES00066 | Sorghum | cytosol, mitochondrion | 96.59 | 96.59 |
| Os08t0151400-01 | Rice | cytosol, nucleus | 68.18 | 93.75 |
| Solyc06g072280.2.1 | Tomato | nucleus | 93.18 | 93.18 |
| GSMUA_Achr2P04990_001 | Banana | cytosol, mitochondrion | 93.18 | 93.18 |
| PGSC0003DMT400069582 | Potato | cytosol, mitochondrion | 93.18 | 93.18 |
| VIT_17s0000g03570.t01 | Wine grape | cytosol, mitochondrion | 92.05 | 92.05 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 92.05 | 92.05 |
| Solyc03g098470.2.1 | Tomato | cytosol, mitochondrion | 92.05 | 92.05 |
| AT2G18740.1 | Thale cress | cytosol, mitochondrion | 92.05 | 92.05 |
| KRH18975 | Soybean | nucleus | 92.05 | 92.05 |
| CDY29245 | Canola | cytosol, mitochondrion | 89.77 | 91.86 |
| CDY59607 | Canola | cytosol, mitochondrion | 89.77 | 91.86 |
| Bra024458.1-P | Field mustard | cytosol, mitochondrion | 89.77 | 91.86 |
| PGSC0003DMT400065677 | Potato | cytosol, mitochondrion | 90.91 | 90.91 |
| KRH02922 | Soybean | nucleus | 90.91 | 90.91 |
| KRH63981 | Soybean | nucleus | 90.91 | 90.91 |
| KRH53956 | Soybean | cytosol, mitochondrion | 90.91 | 90.91 |
| CDY49311 | Canola | cytosol, mitochondrion | 90.91 | 90.91 |
| CDY13008 | Canola | cytosol, mitochondrion | 88.64 | 90.7 |
| AT4G30330.1 | Thale cress | cytosol, mitochondrion | 89.77 | 89.77 |
| GSMUA_Achr10P... | Banana | cytosol | 25.0 | 88.0 |
| PGSC0003DMT400026313 | Potato | mitochondrion | 88.64 | 82.98 |
| CDY52576 | Canola | cytosol | 73.86 | 67.71 |
| HORVU7Hr1G072420.4 | Barley | cytosol, nucleus | 87.5 | 59.23 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G299900.1 | EnsemblPlantsGene:TraesCS7D01G299900 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:snRNP-E | PANTHER:PTHR11193 | PFAM:PF01423 |
| SMART:SM00651 | SUPFAM:SSF50182 | TIGR:cd01718 | MapMan:16.4.2.5 | : | : |
Description
No Description!
Coordinates
chr7D:-:379826761..379829444
Molecular Weight (calculated)
10360.0 Da
IEP (calculated)
10.614
GRAVY (calculated)
-0.265
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDMRIE GRIIGFDEYM NLVLEDAEEI NIKKNTRKSL GRILLKGDNI TLMMNTGK
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GRILLKGDNI TLMMNTGK
Arabidopsis Description
Putative small nuclear ribonucleoprotein E [Source:UniProtKB/TrEMBL;Acc:Q9ZV45]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.