CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18975	Soybean	nucleus	98.86	98.86
KRH63981	Soybean	nucleus	97.73	97.73
KRH53956	Soybean	cytosol, mitochondrion	97.73	97.73
AT4G30330.1	Thale cress	cytosol, mitochondrion	93.18	93.18
Solyc06g072280.2.1	Tomato	nucleus	93.18	93.18
Solyc03g098470.2.1	Tomato	cytosol, mitochondrion	93.18	93.18
PGSC0003DMT400069582	Potato	cytosol, mitochondrion	93.18	93.18
AT2G18740.1	Thale cress	cytosol, mitochondrion	93.18	93.18
Bra024458.1-P	Field mustard	cytosol, mitochondrion	90.91	93.02
CDY29245	Canola	cytosol, mitochondrion	90.91	93.02
CDY59607	Canola	cytosol, mitochondrion	90.91	93.02
Os02t0126700-01	Rice	nucleus	92.05	92.05
VIT_17s0000g03570.t01	Wine grape	cytosol, mitochondrion	92.05	92.05
PGSC0003DMT400065677	Potato	cytosol, mitochondrion	92.05	92.05
GSMUA_Achr2P04990_001	Banana	cytosol, mitochondrion	92.05	92.05
EES00066	Sorghum	cytosol, mitochondrion	92.05	92.05
CDY49311	Canola	cytosol, mitochondrion	92.05	92.05
GSMUA_Achr10P...	Banana	cytosol	26.14	92.0
CDY13008	Canola	cytosol, mitochondrion	89.77	91.86
TraesCS7A01G304400.1	Wheat	cytosol, mitochondrion	90.91	90.91
TraesCS7D01G299900.1	Wheat	cytosol, mitochondrion	90.91	90.91
Os08t0151400-01	Rice	cytosol, nucleus	65.91	90.62
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	89.77	89.77
Zm00001d008916_P001	Maize	mitochondrion	89.77	89.77
TraesCSU01G017200.1	Wheat	cytosol, mitochondrion	87.5	89.53
PGSC0003DMT400026313	Potato	mitochondrion	89.77	84.04
CDY52576	Canola	cytosol	75.0	68.75
Zm00001d023900_P001	Maize	endoplasmic reticulum, extracellular	52.27	68.66
TraesCS6A01G089100.2	Wheat	plastid	90.91	68.38
Zm00001d039372_P002	Maize	endoplasmic reticulum, extracellular, mitochondrion, plastid	56.82	56.82
HORVU7Hr1G072420.4	Barley	cytosol, nucleus	78.41	53.08
TraesCS6B01G111500.1	Wheat	extracellular	53.41	48.45

Protein Annotations

EntrezGene:100306304	MapMan:16.4.2.5	Gene3D:2.30.30.100	EMBL:ACUP02010329	EMBL:BT090346	UniProt:C6SYU8
EnsemblPlantsGene:GLYMA_17G067100	GO:GO:0000387	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0005682	GO:GO:0005685	GO:GO:0005686	GO:GO:0005687
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0030529
GO:GO:0046540	GO:GO:0071011	EnsemblPlants:KRH02922	ProteinID:KRH02922	ProteinID:KRH02922.1	InterPro:LSM_dom_euk/arc
InterPro:LSM_dom_sf	PFAM:PF01423	PANTHER:PTHR11193	SMART:SM00651	SUPFAM:SSF50182	UniParc:UPI0001B15A30
InterPro:snRNP-E	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:5199445..5201201

Molecular Weight (calculated)

10286.9 Da

IEP (calculated)

10.720

GRAVY (calculated)

-0.224

Length

88 amino acids

Sequence
(BLAST)

1: MASTKVQRVM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRIIGFDEYM NLVLDDAEEV SIKKKSRKTL GRILLKGDNI TLMMNTGK

Best Arabidopsis Sequence Match ( AT4G30330.1 )
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKKTRKPL GRILLKGDNI TLMMNAGK

Arabidopsis Description

At4g30330 [Source:UniProtKB/TrEMBL;Acc:Q8LAK5]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.