Factsheet for PGSC0003DMT400026313

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 4
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098470.2.1	Tomato	cytosol, mitochondrion	90.43	96.59
PGSC0003DMT400065677	Potato	cytosol, mitochondrion	89.36	95.45
EES00066	Sorghum	cytosol, mitochondrion	86.17	92.05
KRH63981	Soybean	nucleus	86.17	92.05
KRH53956	Soybean	cytosol, mitochondrion	86.17	92.05
GSMUA_Achr2P04990_001	Banana	cytosol, mitochondrion	86.17	92.05
PGSC0003DMT400069582	Potato	cytosol, mitochondrion	86.17	92.05
VIT_17s0000g03570.t01	Wine grape	cytosol, mitochondrion	86.17	92.05
Zm00001d008916_P001	Maize	mitochondrion	86.17	92.05
GSMUA_Achr10P...	Banana	cytosol	24.47	92.0
KRH18975	Soybean	nucleus	85.11	90.91
CDY59607	Canola	cytosol, mitochondrion	82.98	90.7
CDY29245	Canola	cytosol, mitochondrion	82.98	90.7
CDY13008	Canola	cytosol, mitochondrion	82.98	90.7
Bra024458.1-P	Field mustard	cytosol, mitochondrion	82.98	90.7
AT4G30330.1	Thale cress	cytosol, mitochondrion	84.04	89.77
Os02t0126700-01	Rice	nucleus	84.04	89.77
KRH02922	Soybean	nucleus	84.04	89.77
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	84.04	89.77
TraesCSU01G017200.1	Wheat	cytosol, mitochondrion	81.91	89.53
Os08t0151400-01	Rice	cytosol, nucleus	60.64	89.06
TraesCS7A01G304400.1	Wheat	cytosol, mitochondrion	82.98	88.64
TraesCS7D01G299900.1	Wheat	cytosol, mitochondrion	82.98	88.64
CDY49311	Canola	cytosol, mitochondrion	82.98	88.64
AT2G18740.1	Thale cress	cytosol, mitochondrion	82.98	88.64
Zm00001d023900_P001	Maize	endoplasmic reticulum, extracellular	48.94	68.66
TraesCS6A01G089100.2	Wheat	plastid	82.98	66.67
CDY52576	Canola	cytosol	65.96	64.58
Zm00001d039372_P002	Maize	endoplasmic reticulum, extracellular, mitochondrion, plastid	52.13	55.68
HORVU7Hr1G072420.4	Barley	cytosol, nucleus	71.28	51.54
TraesCS6B01G111500.1	Wheat	extracellular	48.94	47.42

Protein Annotations

MapMan:16.4.2.5	Gene3D:2.30.30.100	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030529	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	UniProt:M1AN07	PFAM:PF01423	EnsemblPlantsGene:PGSC0003DMG400010156
PGSC:PGSC0003DMG400010156	EnsemblPlants:PGSC0003DMT400026313	PANTHER:PTHR11193	SMART:SM00651	SUPFAM:SSF50182	UniParc:UPI000296BB0C
InterPro:snRNP-E	:	:	:	:	:

Description

Small nuclear ribonucleoprotein polypeptide [Source:PGSC_GENE;Acc:PGSC0003DMG400010156]

Coordinates

chr3:+:44582764..44586624

Molecular Weight (calculated)

11081.9 Da

IEP (calculated)

10.263

GRAVY (calculated)

0.088

Length

94 amino acids

Sequence
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRIIGFDEYM NLVLDDAEEV NVKKKTSKQL GRILLKGDNI TLMMNSYVIV ILFF

Best Arabidopsis Sequence Match ( AT4G30330.1 )
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKKTRKPL GRILLKGDNI TLMMNAGK

Arabidopsis Description

At4g30330 [Source:UniProtKB/TrEMBL;Acc:Q8LAK5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.