CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G18740.1	Thale cress	cytosol, mitochondrion	73.96	80.68
Bra024458.1-P	Field mustard	cytosol, mitochondrion	71.88	80.23
CDY29245	Canola	cytosol, mitochondrion	71.88	80.23
CDY59607	Canola	cytosol, mitochondrion	71.88	80.23
CDY49311	Canola	cytosol, mitochondrion	71.88	78.41
CDY13008	Canola	cytosol, mitochondrion	69.79	77.91
Os02t0126700-01	Rice	nucleus	69.79	76.14
GSMUA_Achr2P04990_001	Banana	cytosol, mitochondrion	69.79	76.14
KRH02922	Soybean	nucleus	68.75	75.0
EES00066	Sorghum	cytosol, mitochondrion	68.75	75.0
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	67.71	73.86
VIT_17s0000g03570.t01	Wine grape	cytosol, mitochondrion	67.71	73.86
KRH18975	Soybean	nucleus	67.71	73.86
TraesCS7D01G299900.1	Wheat	cytosol, mitochondrion	67.71	73.86
TraesCS7A01G304400.1	Wheat	cytosol, mitochondrion	67.71	73.86
Solyc06g072280.2.1	Tomato	nucleus	67.71	73.86
Solyc03g098470.2.1	Tomato	cytosol, mitochondrion	67.71	73.86
PGSC0003DMT400069582	Potato	cytosol, mitochondrion	67.71	73.86
Zm00001d008916_P001	Maize	mitochondrion	66.67	72.73
PGSC0003DMT400065677	Potato	cytosol, mitochondrion	66.67	72.73
KRH63981	Soybean	nucleus	66.67	72.73
KRH53956	Soybean	cytosol, mitochondrion	66.67	72.73
TraesCSU01G017200.1	Wheat	cytosol, mitochondrion	64.58	72.09
PGSC0003DMT400026313	Potato	mitochondrion	64.58	65.96
Os08t0151400-01	Rice	cytosol, nucleus	43.75	65.62
TraesCS6A01G089100.2	Wheat	plastid	67.71	55.56
Zm00001d023900_P001	Maize	endoplasmic reticulum, extracellular	36.46	52.24
TraesCS6B01G111500.1	Wheat	extracellular	46.88	46.39
Zm00001d039372_P002	Maize	endoplasmic reticulum, extracellular, mitochondrion, plastid	40.62	44.32
HORVU7Hr1G072420.4	Barley	cytosol, nucleus	56.25	41.54
GSMUA_Achr10P...	Banana	cytosol	8.33	32.0

Protein Annotations

MapMan:16.4.2.5	Gene3D:2.30.30.100	GO:A0A078IRV6	UniProt:A0A078IRV6	EnsemblPlants:CDY52576	ProteinID:CDY52576
ProteinID:CDY52576.1	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529
EnsemblPlantsGene:GSBRNA2T00007342001	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	PFAM:PF01423	PANTHER:PTHR11193	SMART:SM00651
SUPFAM:SSF50182	UniParc:UPI0004EEF5DE	InterPro:snRNP-E	:	:	:

Description

BnaCnng22610DBnaCnng22610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRV6]

Coordinates

chrLK033105:+:9788..10954

Molecular Weight (calculated)

11235.2 Da

IEP (calculated)

11.020

GRAVY (calculated)

-0.026

Length

96 amino acids

Sequence
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LLKEESLVLT NTSYMNLVLD EAEEVSIKKN TRKPLGRILL KGDNITLMMN TGKLYFFSQR SLLRML

Best Arabidopsis Sequence Match ( AT2G18740.1 )
(BLAST)

1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKNTRKPL GRILLKGDNI TLMMNTGK

Arabidopsis Description

Putative small nuclear ribonucleoprotein E [Source:UniProtKB/TrEMBL;Acc:Q9ZV45]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.