Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 4
- cytosol 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 97.73 | 97.73 |
| Solyc03g098470.2.1 | Tomato | cytosol, mitochondrion | 95.45 | 95.45 |
| AT4G30330.1 | Thale cress | cytosol, mitochondrion | 94.32 | 94.32 |
| Zm00001d008916_P001 | Maize | mitochondrion | 94.32 | 94.32 |
| PGSC0003DMT400065677 | Potato | cytosol, mitochondrion | 94.32 | 94.32 |
| Os02t0126700-01 | Rice | nucleus | 94.32 | 94.32 |
| KRH63981 | Soybean | nucleus | 94.32 | 94.32 |
| KRH53956 | Soybean | cytosol, mitochondrion | 94.32 | 94.32 |
| EES00066 | Sorghum | cytosol, mitochondrion | 94.32 | 94.32 |
| AT2G18740.1 | Thale cress | cytosol, mitochondrion | 94.32 | 94.32 |
| CDY59607 | Canola | cytosol, mitochondrion | 92.05 | 94.19 |
| CDY29245 | Canola | cytosol, mitochondrion | 92.05 | 94.19 |
| Bra024458.1-P | Field mustard | cytosol, mitochondrion | 92.05 | 94.19 |
| KRH18975 | Soybean | nucleus | 93.18 | 93.18 |
| VIT_17s0000g03570.t01 | Wine grape | cytosol, mitochondrion | 93.18 | 93.18 |
| TraesCS7D01G299900.1 | Wheat | cytosol, mitochondrion | 93.18 | 93.18 |
| TraesCS7B01G204700.1 | Wheat | unclear | 93.18 | 93.18 |
| PGSC0003DMT400069582 | Potato | cytosol, mitochondrion | 93.18 | 93.18 |
| Solyc06g072280.2.1 | Tomato | nucleus | 93.18 | 93.18 |
| TraesCS7A01G304400.1 | Wheat | cytosol, mitochondrion | 93.18 | 93.18 |
| Os08t0151400-01 | Rice | cytosol, nucleus | 67.05 | 92.19 |
| KRH02922 | Soybean | nucleus | 92.05 | 92.05 |
| CDY49311 | Canola | cytosol, mitochondrion | 92.05 | 92.05 |
| GSMUA_Achr10P... | Banana | cytosol | 26.14 | 92.0 |
| CDY13008 | Canola | cytosol, mitochondrion | 89.77 | 91.86 |
| TraesCSU01G017200.1 | Wheat | cytosol, mitochondrion | 89.77 | 91.86 |
| PGSC0003DMT400026313 | Potato | mitochondrion | 92.05 | 86.17 |
| TraesCS6A01G089100.2 | Wheat | plastid | 93.18 | 70.09 |
| CDY52576 | Canola | cytosol | 76.14 | 69.79 |
| Zm00001d023900_P001 | Maize | endoplasmic reticulum, extracellular | 52.27 | 68.66 |
| Zm00001d039372_P002 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plastid | 55.68 | 55.68 |
| HORVU7Hr1G072420.4 | Barley | cytosol, nucleus | 80.68 | 54.62 |
Protein Annotations
| MapMan:16.4.2.5 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0030529 | EnsemblPlantsGene:GSMUA_Achr2G04990_001 | EnsemblPlants:GSMUA_Achr2P04990_001 | EnsemblPlants:GSMUA_Achr2T04990_001 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf |
| UniProt:M0S590 | PFAM:PF01423 | PANTHER:PTHR11193 | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI0002950391 |
| SEG:seg | InterPro:snRNP-E | : | : | : | : |
Description
Small nuclear ribonucleoprotein E [Source:GMGC_GENE;Acc:GSMUA_Achr2G04990_001]
Coordinates
chr2:-:10216703..10219269
Molecular Weight (calculated)
10352.0 Da
IEP (calculated)
10.720
GRAVY (calculated)
-0.264
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRIIGFDEYM NLVLEEAEEV NVKKKTRKPL GRILLKGDNI TLMMNTGK
1: MASTKVQRIM TQPINLIFRF LQSKARIQIW LFEQKDLRIE GRITGFDEYM NLVLDEAEEV SIKKKTRKPL GRILLKGDNI TLMMNAGK
Arabidopsis Description
At4g30330 [Source:UniProtKB/TrEMBL;Acc:Q8LAK5]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.