Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g075130.2.1 | Tomato | nucleus | 100.0 | 96.33 |
| VIT_01s0011g06020.t01 | Wine grape | cytosol | 80.95 | 82.52 |
| Bra014389.1-P | Field mustard | cytosol | 81.9 | 81.9 |
| Os05t0314100-02 | Rice | nucleus | 80.95 | 80.95 |
| KRG92316 | Soybean | cytosol | 75.24 | 80.61 |
| AT3G62840.1 | Thale cress | cytosol | 82.86 | 79.82 |
| AT2G47640.1 | Thale cress | cytosol | 82.86 | 79.82 |
| GSMUA_Achr2P00230_001 | Banana | cytosol | 78.1 | 78.85 |
| EES17571 | Sorghum | cytosol | 78.1 | 78.85 |
| Zm00001d003014_P002 | Maize | cytosol | 78.1 | 78.1 |
| EES12524 | Sorghum | cytosol | 78.1 | 78.1 |
| Zm00001d025866_P001 | Maize | cytosol | 77.14 | 77.14 |
| TraesCS3A01G517300.1 | Wheat | nucleus | 77.14 | 76.42 |
| TraesCS3D01G524800.1 | Wheat | cytosol | 76.19 | 76.19 |
| TraesCS4B01G361800.1 | Wheat | cytosol | 75.24 | 73.83 |
| TraesCS4D01G354800.2 | Wheat | cytosol | 75.24 | 73.83 |
| TraesCS5A01G529800.2 | Wheat | cytosol | 75.24 | 73.83 |
| CDY01762 | Canola | cytosol | 69.52 | 72.28 |
| TraesCS3B01G584900.1 | Wheat | cytosol | 77.14 | 70.43 |
| Bra007706.1-P | Field mustard | cytosol | 81.9 | 68.8 |
| GSMUA_Achr11P... | Banana | extracellular, golgi | 77.14 | 65.32 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular | 78.1 | 64.57 |
| HORVU4Hr1G086790.2 | Barley | mitochondrion | 79.05 | 62.41 |
| VIT_07s0005g00500.t01 | Wine grape | nucleus, plastid | 80.0 | 49.41 |
| HORVU3Hr1G113110.1 | Barley | mitochondrion | 77.14 | 49.39 |
Protein Annotations
| MapMan:16.4.2.3 | Gene3D:2.30.30.100 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0030529 |
| GO:GO:0030532 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | UniProt:M1AT84 | PFAM:PF01423 | EnsemblPlantsGene:PGSC0003DMG400011403 |
| PGSC:PGSC0003DMG400011403 | EnsemblPlants:PGSC0003DMT400029670 | PANTHER:PTHR12777 | SMART:SM00651 | SUPFAM:SSF50182 | InterPro:Sm_D2 |
| UniParc:UPI00029570F1 | SEG:seg | : | : | : | : |
Description
Small nuclear ribonucleoprotein [Source:PGSC_GENE;Acc:PGSC0003DMG400011403]
Coordinates
chr9:-:52664561..52668559
Molecular Weight (calculated)
12089.8 Da
IEP (calculated)
10.545
GRAVY (calculated)
-0.609
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDAPQGKN EEEEFNTGPL SVLMMSVKNN TQVLINCRNN RKLLGRVRAF DRHCNMVLEN VREMWTEVPK TGKGKKKAVA VNKDRFISKM FLRGDSVIIV
101: LRNPK
101: LRNPK
001: MSKPMEEDTN QGKTEEEEFN TGPLSVLMMS VKNNTQVLIN CRNNRKLLGR VRAFDRHCNM VLENVREMWT EVPKTGKGKK KALPVNRDRF ISKMFLRGDS
101: VIIVLRNPK
101: VIIVLRNPK
Arabidopsis Description
Putative small nuclear ribonucleoprotein D2 [Source:UniProtKB/TrEMBL;Acc:Q8RUH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.